mRNA_Ecto-sp13_S_contig17482.5249.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17482.5249.1
Unique NamemRNA_Ecto-sp13_S_contig17482.5249.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17482.5249.1 vs. uniprot
Match: A0A6H5K450_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K450_9PHAE)

HSP 1 Score: 479 bits (1232), Expect = 6.220e-155
Identity = 442/525 (84.19%), Postives = 449/525 (85.52%), Query Frame = 1 
Query:    1 MTRGGNGVHSSTQRSSSSIAAGLRSGSXXXXXXXXXXXXXXXXTAVNFAEEVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGGDDFTPLRSADSCHTVEASEPPGWMGRGRKEGRGMAALKSVAGSHGSSFPGSSSSAAGGGTTSLPLAEFPRLQSSTPPPKPAGLSLVRINSDASTNSGAGFGGAVNTRSSSELSPSFTARVAAGGKNAAPGGNSNSSSADNSPEMRFNKSRDSVLILKSAPGVCRSRKVRSSGSAAXXXXXAKNNASLSVGKTNDTIAAARRSLRRTGSLPVADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQMSPRAKGFSAIMFHESFTPVDTKAGADPTKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRR-------IGASVAALAGGSSIAAENEQLKLESRRLASALSTARESADMTEERSRVLAKQATLRVSG 1554
            MTRGGNGVHSSTQRSSSSIAAGLRSGSXXXXXXXXXXXXXXXX   N AEEVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGGDDFTPLRSADSCHTVEAS+PPGW GRGRKE RGMAALKSVAG HGSSFPGSS+SAAG  TTSLPLAEFPRLQSSTPPPKPAGLSLVRINSDASTNSGAGFGGA NTRS+SE SPSF ARVAAGGKNAAPGGNSNSSSADNSPE+RFNKSRDSVLILKSAPGVCRSRK        XXXXX                           SLPVA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +QMSPRAKGFSAIMFHESFT VDTKAGADP KKQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         +GASVAALAGGSSIAAENEQLKLESRRLASALSTARESADMT+ERSRVLAKQATLRV G
Sbjct:    1 MTRGGNGVHSSTQRSSSSIAAGLRSGSXXXXXXXXXXXXXXXXXXXNSAEEVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGGDDFTPLRSADSCHTVEASDPPGWRGRGRKEERGMAALKSVAGLHGSSFPGSSASAAGDCTTSLPLAEFPRLQSSTPPPKPAGLSLVRINSDASTNSGAGFGGAANTRSTSEFSPSFMARVAAGGKNAAPGGNSNSSSADNSPEVRFNKSRDSVLILKSAPGVCRSRKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNKM---------QQMSPRAKGFSAIMFHESFTSVDTKAGADPIKKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGASVAALAGGSSIAAENEQLKLESRRLASALSTARESADMTKERSRVLAKQATLRVRG 516
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17482.5249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K450_9PHAE6.220e-15584.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17482contigEcto-sp13_S_contig17482:1323..3464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1569
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003520.4
Cds size1569
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462910.765907-CDS-Ecto-sp13_S_contig17482:1322..14061681462910.765907-CDS-Ecto-sp13_S_contig17482:1322..1406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17482 1323..1406 -
1681462910.7749617-CDS-Ecto-sp13_S_contig17482:1979..34641681462910.7749617-CDS-Ecto-sp13_S_contig17482:1979..3464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17482 1980..3464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17482.5249.1prot_Ecto-sp13_S_contig17482.5249.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17482 1323..3464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17482.5249.1

>prot_Ecto-sp13_S_contig17482.5249.1 ID=prot_Ecto-sp13_S_contig17482.5249.1|Name=mRNA_Ecto-sp13_S_contig17482.5249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=523bp
MTRGGNGVHSSTQRSSSSIAAGLRSGSRKTTAAGGAAPAAAAATAVNFAE
EVARGLEALEAVAIAAKTSSSRSPPGTRNGSFSSTIGGGDDFTPLRSADS
CHTVEASEPPGWMGRGRKEGRGMAALKSVAGSHGSSFPGSSSSAAGGGTT
SLPLAEFPRLQSSTPPPKPAGLSLVRINSDASTNSGAGFGGAVNTRSSSE
LSPSFTARVAAGGKNAAPGGNSNSSSADNSPEMRFNKSRDSVLILKSAPG
VCRSRKVRSSGSAAAAGAAAKNNASLSVGKTNDTIAAARRSLRRTGSLPV
ADAANNNNASAAAVAAAAAASTGTPDDDQQQQQQQQQQQQPKRSFSSSSL
TKKKQMSPRAKGFSAIMFHESFTPVDTKAGADPTKKQQRGWWVGENNHHP
LSPPPTLSSPPRRRAPPQQQQQQQQQQRQQQQGQQAGEGVVVVAEDSRSA
RGGSSGARRIGASVAALAGGSSIAAENEQLKLESRRLASALSTARESADM
TEERSRVLAKQATLRVSGRKEKK
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mRNA from alignment at Ecto-sp13_S_contig17482:1323..3464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17482.5249.1 ID=mRNA_Ecto-sp13_S_contig17482.5249.1|Name=mRNA_Ecto-sp13_S_contig17482.5249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2142bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17482:1323..3464- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGGGAGGCAACGGCGTGCACAGCAGCACCCAGCGGAGCAGCAG
CAGTATCGCCGCCGGCCTTCGCAGCGGTAGCAGGAAGACCACAGCAGCAG
GAGGCGCAGCACCAGCAGCAGCAGCAGCGACGGCCGTCAACTTCGCCGAG
GAGGTCGCGAGAGGCCTCGAGGCGCTCGAGGCAGTCGCCATCGCGGCCAA
GACCTCCTCCAGCCGATCGCCCCCGGGGACTCGGAACGGATCGTTTTCGT
CAACAATCGGCGGCGGCGACGACTTCACGCCTTTACGGTCGGCGGACTCT
TGTCACACCGTGGAGGCCTCAGAGCCGCCGGGCTGGATGGGGAGAGGGCG
GAAGGAGGGGAGAGGGATGGCGGCCCTCAAGAGCGTGGCCGGGTCGCACG
GTTCGTCGTTCCCCGGTAGCAGCTCTTCCGCAGCCGGCGGCGGCACTACT
TCTCTGCCGCTAGCGGAGTTTCCTCGGCTGCAGTCGAGCACACCTCCGCC
CAAGCCCGCCGGGTTGTCACTCGTCCGCATCAACAGCGACGCGTCGACGA
ACAGCGGCGCTGGCTTCGGCGGCGCCGTCAACACCCGGAGCAGCTCCGAG
TTATCTCCCTCCTTCACCGCGAGGGTTGCCGCCGGCGGGAAGAACGCAGC
ACCAGGCGGTAATAGCAACTCCTCCTCCGCCGACAACTCGCCGGAAATGC
GGTTCAATAAGTCGAGGGACTCGGTGCTGATCCTGAAATCAGCCCCCGGG
GTCTGTCGGAGCAGGAAGGTGAGGTCGTCCGGATCTGCGGCCGCCGCGGG
AGCAGCGGCCAAAAACAACGCCTCACTTAGTGTGGGGAAGACCAACGACA
CGATCGCCGCTGCCCGTCGGAGCCTCCGTAGGACGGGGTCCCTCCCCGTA
GCCGACGCCGCCAACAACAATAACGCCTCTGCCGCGGCGGTGGCGGCGGC
GGCGGCGGCGTCGACGGGTACTCCAGACGACGACCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAGCAGCCCAAGCGGTCCTTTTCTTCCTCGTCGTTG
ACCAAGAAGAAGCAGATGTCCCCTCGCGCGAAAGGGTTCAGCGCGATAAT
GTTTCACGAGAGCTTCACGCCCGTCGACACCAAGGCCGGCGCCGACCCGA
CCAAGAAGCAGCAGCGAGGCTGGTGGGTGGGAGAGAACAACCACCACCCT
CTATCTCCACCGCCAACGCTGTCGAGCCCCCCTCGCCGGCGTGCCCCTCC
ACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCGGCAGCAGCAACAAGGGC
AACAGGCCGGCGAAGGTGTCGTCGTTGTCGCCGAAGACTCTCGGTCTGCG
CGGGGTGGCAGTAGCGGCGCCAGGAGGATCGGCGCGAGCGTCGCGGCCTT
GGCGGGAGGAAGCAGCATTGCGGCCGAGAACGAACAGCTCAAGCTGGAGA
GCAGGCGGCTCGCGAGCGCGCTGTCTACGGCGAGGGTGAGTCGAGACTAA
GGACGAAGCGGATGATTTTCATGAAAGTCTACAAAAGAATTCAGAAATTA
TTTATAATAACACGGAGAGACTACCCGTTGGAGATTCAACAACAGTTTCA
AGTAGTTGTGCTGATGTCTTCCCCCCATTCCGTTCCATGACTGGTAAGAT
AGTGAGCTTGAAATCGAGCTCTGGCCGCCCGAGCAATGCTTTCTGTAAAA
TTAGGTTGCAGACGCAGTCAAGATCTTTATGCTCAAACTTGTATGCATGT
CAAAACGTAGTTAGAGCTCGAACACCGTTTGGTCAGCCGCGGCTAAGAAT
TCCTACACTAGAAACCTATGTTGCGGCCATTTTTTCGCCCACAGGAGGAA
CCCGGAACAAGCGCACTCAGCACCCAAGGTCGATATCTCAATGTTGTGAT
GCGCACGTTCAGTTGTCTTTCGCCGAAACTATTCGAAGTATTCCCTGCGT
ATCTCGAAGGAAGGCAACAAACAGCAGTTCGTGGTACGCCCAGAATTTTC
ACGTGATTTTTCATTGTTTTCTCTATATTCCTATTTACACGACGATGACG
ATGAGAAGGAAAGCGCGGACATGACGGAGGAGCGATCCAGGGTGCTGGCC
AAGCAGGCGACTTTGCGGGTAAGCGGCAGAAAAGAAAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17482:1323..3464-

>mRNA_Ecto-sp13_S_contig17482.5249.1 ID=mRNA_Ecto-sp13_S_contig17482.5249.1|Name=mRNA_Ecto-sp13_S_contig17482.5249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1569bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17482:1323..3464- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGGGAGGCAACGGCGTGCACAGCAGCACCCAGCGGAGCAGCAG
CAGTATCGCCGCCGGCCTTCGCAGCGGTAGCAGGAAGACCACAGCAGCAG
GAGGCGCAGCACCAGCAGCAGCAGCAGCGACGGCCGTCAACTTCGCCGAG
GAGGTCGCGAGAGGCCTCGAGGCGCTCGAGGCAGTCGCCATCGCGGCCAA
GACCTCCTCCAGCCGATCGCCCCCGGGGACTCGGAACGGATCGTTTTCGT
CAACAATCGGCGGCGGCGACGACTTCACGCCTTTACGGTCGGCGGACTCT
TGTCACACCGTGGAGGCCTCAGAGCCGCCGGGCTGGATGGGGAGAGGGCG
GAAGGAGGGGAGAGGGATGGCGGCCCTCAAGAGCGTGGCCGGGTCGCACG
GTTCGTCGTTCCCCGGTAGCAGCTCTTCCGCAGCCGGCGGCGGCACTACT
TCTCTGCCGCTAGCGGAGTTTCCTCGGCTGCAGTCGAGCACACCTCCGCC
CAAGCCCGCCGGGTTGTCACTCGTCCGCATCAACAGCGACGCGTCGACGA
ACAGCGGCGCTGGCTTCGGCGGCGCCGTCAACACCCGGAGCAGCTCCGAG
TTATCTCCCTCCTTCACCGCGAGGGTTGCCGCCGGCGGGAAGAACGCAGC
ACCAGGCGGTAATAGCAACTCCTCCTCCGCCGACAACTCGCCGGAAATGC
GGTTCAATAAGTCGAGGGACTCGGTGCTGATCCTGAAATCAGCCCCCGGG
GTCTGTCGGAGCAGGAAGGTGAGGTCGTCCGGATCTGCGGCCGCCGCGGG
AGCAGCGGCCAAAAACAACGCCTCACTTAGTGTGGGGAAGACCAACGACA
CGATCGCCGCTGCCCGTCGGAGCCTCCGTAGGACGGGGTCCCTCCCCGTA
GCCGACGCCGCCAACAACAATAACGCCTCTGCCGCGGCGGTGGCGGCGGC
GGCGGCGGCGTCGACGGGTACTCCAGACGACGACCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAGCAGCCCAAGCGGTCCTTTTCTTCCTCGTCGTTG
ACCAAGAAGAAGCAGATGTCCCCTCGCGCGAAAGGGTTCAGCGCGATAAT
GTTTCACGAGAGCTTCACGCCCGTCGACACCAAGGCCGGCGCCGACCCGA
CCAAGAAGCAGCAGCGAGGCTGGTGGGTGGGAGAGAACAACCACCACCCT
CTATCTCCACCGCCAACGCTGTCGAGCCCCCCTCGCCGGCGTGCCCCTCC
ACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCGGCAGCAGCAACAAGGGC
AACAGGCCGGCGAAGGTGTCGTCGTTGTCGCCGAAGACTCTCGGTCTGCG
CGGGGTGGCAGTAGCGGCGCCAGGAGGATCGGCGCGAGCGTCGCGGCCTT
GGCGGGAGGAAGCAGCATTGCGGCCGAGAACGAACAGCTCAAGCTGGAGA
GCAGGCGGCTCGCGAGCGCGCTGTCTACGGCGAGGGAAAGCGCGGACATG
ACGGAGGAGCGATCCAGGGTGCTGGCCAAGCAGGCGACTTTGCGGGTAAG
CGGCAGAAAAGAAAAGAAG
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