mRNA_Ecto-sp13_S_contig1744.5223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1744.5223.1
Unique NamemRNA_Ecto-sp13_S_contig1744.5223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1744.5223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1744contigEcto-sp13_S_contig1744:1947..2481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size520
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.978293-UTR-Ecto-sp13_S_contig1744:1946..21751681462908.978293-UTR-Ecto-sp13_S_contig1744:1946..2175Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1744 1947..2175 +
1681462909.0065742-UTR-Ecto-sp13_S_contig1744:2457..24811681462909.0065742-UTR-Ecto-sp13_S_contig1744:2457..2481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1744 2458..2481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.9877398-CDS-Ecto-sp13_S_contig1744:2175..23391681462908.9877398-CDS-Ecto-sp13_S_contig1744:2175..2339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1744 2176..2339 +
1681462908.9982076-CDS-Ecto-sp13_S_contig1744:2354..24571681462908.9982076-CDS-Ecto-sp13_S_contig1744:2354..2457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1744 2355..2457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1744.5223.1prot_Ecto-sp13_S_contig1744.5223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1744 2176..2457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1744.5223.1

>prot_Ecto-sp13_S_contig1744.5223.1 ID=prot_Ecto-sp13_S_contig1744.5223.1|Name=mRNA_Ecto-sp13_S_contig1744.5223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MRKVCATTACGSLVLEQHEGMPQRSPVSSPFTRVSWTTGRHGHEVRPEWL
LLAKRQQQQQQQRQRHSIRQEAQAVRLRNVPSFHQKIA*
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mRNA from alignment at Ecto-sp13_S_contig1744:1947..2481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1744.5223.1 ID=mRNA_Ecto-sp13_S_contig1744.5223.1|Name=mRNA_Ecto-sp13_S_contig1744.5223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1744:1947..2481+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATGTTTCGACTTTAGGCCACGACGGTATCAAATTCGTGGATCTAGGCA
GACAAGGGGGCAGAGGGAGGAGTGGAGGCGAAGGCAGGGGCGGTGCCGAC
GGCGGTGGTAGCGAGGGTTGAGCCCCGTGCGCCCCAGACGCTTGCCGACG
ATGATAACTGCCGCGGCGTTGGCGTTCATCTCTACACGTGATTCGTACCT
CCCAGCCGACTTCCAAACAACGCAAACATATGCGCAAGGTTTGCGCTACT
ACTGCATGCGGTAGCCTGGTACTTGAGCAACACGAGGGTATGCCACAACG
ATCACCGGTTTCTTCACCTTTTACACGGGTAAGTTGGACCACCGGTCGGC
ACGGACATGAGGTAAGACCCGAGTGGCTCTTATTGGCCAAAAGACAACAA
CAACAACAACAACAACAACAACAACAACAACGACAACGACACTCGATACG
ACAAGAGGCCCAAGCCGTCCGTCTCAGGAACGTTCCCAGCTTCCACCAAA
AAATTGCCTAATGCGGCTCAGAGGAAGGGGACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1744:1947..2481+

>mRNA_Ecto-sp13_S_contig1744.5223.1 ID=mRNA_Ecto-sp13_S_contig1744.5223.1|Name=mRNA_Ecto-sp13_S_contig1744.5223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1744:1947..2481+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAAGGTTTGCGCTACTACTGCATGCGGTAGCCTGGTACTTGAGCA
ACACGAGGGTATGCCACAACGATCACCGGTTTCTTCACCTTTTACACGGG
TAAGTTGGACCACCGGTCGGCACGGACATGAGGTAAGACCCGAGTGGCTC
TTATTGGCCAAAAGACAACAACAACAACAACAACAACGACAACGACACTC
GATACGACAAGAGGCCCAAGCCGTCCGTCTCAGGAACGTTCCCAGCTTCC
ACCAAAAAATTGCCTAA
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