mRNA_Ecto-sp13_S_contig17384.5197.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17384.5197.1
Unique NamemRNA_Ecto-sp13_S_contig17384.5197.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17384.5197.1 vs. uniprot
Match: A0A6H5KXU0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU0_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 9.070e-109
Identity = 235/289 (81.31%), Postives = 238/289 (82.35%), Query Frame = 1 
Query:   25 DGEDGDGDDHAMSGEAAVSADGVPAVVVGDRSGREGGAILTTPDAMQSQLSSSVAEXXXXXXXXXXXXXX-PADGKSAVSSAAMSSLFLSQGHHIDDERGAIGGTFGRAYASDFGAGAGGIASALGGGGGFSDSHRQIGVHGYTMPLPAAXXXXXXASDDYSNEDEFFGALGESPSQLLRPRSEPGRPGTAAAXXXAGGCSEPRHRSRR------------------NSPNDVVDSSKRGAYRGDAASAQGAKGKRGVKAARGGGGLRRGRSRGLPVGEVAGDGSLAPS 834
            DGED DGDDH+MSGEAA SADGVP VVVGDRSG EGGAILTTPDAMQSQLSSSVAEXXXXXXXXXXXX   PADGKSAVSS AMSSLFLSQGHHIDDERGAI GTFGRAYASDFGAGAGGIASA GG   F DSHRQ+GVHGYTMPLPA XXXXXXASDDYSNEDE FGALGESPSQLLRPRSEPGRPGTAA XXX                               NSPNDVVDSSKRG +RGDAASAQGAKGKRGVKA RGGGGLRRGRSRGLPVG VAGDGSLAPS
Sbjct:  905 DGEDADGDDHSMSGEAAASADGVPGVVVGDRSGCEGGAILTTPDAMQSQLSSSVAEXXXXXXXXXXXXATTPADGKSAVSSDAMSSLFLSQGHHIDDERGAIEGTFGRAYASDFGAGAGGIASAFGGXXXFGDSHRQMGVHGYTMPLPAXXXXXXXASDDYSNEDECFGALGESPSQLLRPRSEPGRPGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSPNDVVDSSKRGDHRGDAASAQGAKGKRGVKAPRGGGGLRRGRSRGLPVGGVAGDGSLAPS 1193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17384.5197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXU0_9PHAE9.070e-10981.31Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17384contigEcto-sp13_S_contig17384:2409..3692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1185
Hectar predicted targeting categoryother localisation
Exons2
Cds size1185
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462906.964882-CDS-Ecto-sp13_S_contig17384:2408..29521681462906.964882-CDS-Ecto-sp13_S_contig17384:2408..2952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17384 2409..2952 -
1681462906.975005-CDS-Ecto-sp13_S_contig17384:3051..36921681462906.975005-CDS-Ecto-sp13_S_contig17384:3051..3692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17384 3052..3692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17384.5197.1prot_Ecto-sp13_S_contig17384.5197.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17384 2409..3692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17384.5197.1

>prot_Ecto-sp13_S_contig17384.5197.1 ID=prot_Ecto-sp13_S_contig17384.5197.1|Name=mRNA_Ecto-sp13_S_contig17384.5197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=395bp
AAAAAAAEDGEDGDGDDHAMSGEAAVSADGVPAVVVGDRSGREGGAILTT
PDAMQSQLSSSVAEAAAAAAASAVVATTPADGKSAVSSAAMSSLFLSQGH
HIDDERGAIGGTFGRAYASDFGAGAGGIASALGGGGGFSDSHRQIGVHGY
TMPLPAAAATAAAASDDYSNEDEFFGALGESPSQLLRPRSEPGRPGTAAA
AAAAGGCSEPRHRSRRNSPNDVVDSSKRGAYRGDAASAQGAKGKRGVKAA
RGGGGLRRGRSRGLPVGEVAGDGSLAPSVAGKRSGLRRRDGAAMVERANE
GVVAGKKGSPPPPASALQGGSGRGAPRGLSVETRRGKALREGGGGAAAAA
AAAAAAAAAATEGQQADTTSRVARLSLLHQQSTDRGGGGNRGVT*
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mRNA from alignment at Ecto-sp13_S_contig17384:2409..3692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17384.5197.1 ID=mRNA_Ecto-sp13_S_contig17384.5197.1|Name=mRNA_Ecto-sp13_S_contig17384.5197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1284bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17384:2409..3692- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCAGCAGCAGCAGCAGCGGAGGATGGCGAAGATGGAGACGGAGACGA
CCACGCCATGTCCGGCGAAGCTGCCGTTTCCGCCGACGGCGTCCCGGCGG
TCGTTGTCGGTGACCGGTCCGGCCGCGAGGGAGGCGCGATCCTCACGACG
CCCGACGCGATGCAATCTCAGCTTTCCTCCTCCGTGGCGGAAGCCGCCGC
CGCCGCTGCCGCTTCCGCTGTCGTTGCGACTACCCCCGCCGATGGGAAGA
GTGCGGTGTCGTCGGCTGCGATGTCAAGCCTGTTCCTCTCGCAAGGGCAC
CACATCGACGACGAGCGAGGAGCCATAGGAGGGACGTTCGGTAGGGCGTA
CGCCAGCGACTTCGGCGCCGGTGCCGGAGGGATAGCTAGCGCCCTCGGCG
GAGGCGGTGGTTTCAGCGATTCCCACCGCCAGATCGGCGTTCACGGCTAC
ACGATGCCGTTGCCAGCGGCGGCGGCAACGGCAGCGGCGGCGTCTGACGA
CTATAGTAACGAGGACGAATTCTTCGGGGCTTTGGGCGAGTCTCCCTCTC
AGTTGCTAAGGCCGAGGTCGGAGCCCGGCCGGCCTGGGACGGCGGCGGCG
GCGGCGGCGGCGGGAGGGTGCAGCGAGCCACGACATCGCAGGTGCCGTCA
CCACGACGCTTCCGCTAGCGGCGGAGGCGGCGGCGGCGGTGGCGGCGGCG
GCGGCGGTAGCAGCGGCGGCGGTAGCAGCGGCGGTAGCAGCCGCCGCAAC
TCTCCGAATGACGTCGTTGACAGCAGCAAGCGGGGAGCTTATCGAGGGGA
CGCTGCTAGCGCGCAGGGTGCAAAGGGCAAAAGAGGTGTAAAGGCGGCAA
GGGGAGGGGGAGGCCTCCGGCGGGGTCGGAGTCGAGGTCTGCCGGTAGGA
GAGGTGGCTGGTGACGGTTCATTGGCCCCGTCGGTCGCAGGGAAGCGGTC
GGGGTTGCGAAGGAGAGACGGCGCTGCGATGGTGGAGAGAGCAAACGAGG
GCGTAGTAGCGGGCAAGAAAGGTTCGCCGCCGCCGCCGGCTTCCGCGCTG
CAAGGGGGCAGCGGCAGAGGCGCCCCCAGGGGGTTGTCGGTGGAAACCCG
TCGAGGGAAGGCCCTCAGGGAGGGCGGAGGGGGAGCGGCGGCAGCAGCAG
CTGCTGCTGCTGCCGCGGCGGCGGCGGCAACCGAGGGCCAGCAGGCGGAC
ACAACTTCTCGCGTGGCACGGCTATCGTTGTTGCACCAACAGTCTACTGA
TCGCGGAGGCGGCGGCAACCGTGGCGTGACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17384:2409..3692-

>mRNA_Ecto-sp13_S_contig17384.5197.1 ID=mRNA_Ecto-sp13_S_contig17384.5197.1|Name=mRNA_Ecto-sp13_S_contig17384.5197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17384:2409..3692- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCAGCAGCAGCAGCAGCGGAGGATGGCGAAGATGGAGACGGAGACGA
CCACGCCATGTCCGGCGAAGCTGCCGTTTCCGCCGACGGCGTCCCGGCGG
TCGTTGTCGGTGACCGGTCCGGCCGCGAGGGAGGCGCGATCCTCACGACG
CCCGACGCGATGCAATCTCAGCTTTCCTCCTCCGTGGCGGAAGCCGCCGC
CGCCGCTGCCGCTTCCGCTGTCGTTGCGACTACCCCCGCCGATGGGAAGA
GTGCGGTGTCGTCGGCTGCGATGTCAAGCCTGTTCCTCTCGCAAGGGCAC
CACATCGACGACGAGCGAGGAGCCATAGGAGGGACGTTCGGTAGGGCGTA
CGCCAGCGACTTCGGCGCCGGTGCCGGAGGGATAGCTAGCGCCCTCGGCG
GAGGCGGTGGTTTCAGCGATTCCCACCGCCAGATCGGCGTTCACGGCTAC
ACGATGCCGTTGCCAGCGGCGGCGGCAACGGCAGCGGCGGCGTCTGACGA
CTATAGTAACGAGGACGAATTCTTCGGGGCTTTGGGCGAGTCTCCCTCTC
AGTTGCTAAGGCCGAGGTCGGAGCCCGGCCGGCCTGGGACGGCGGCGGCG
GCGGCGGCGGCGGGAGGGTGCAGCGAGCCACGACATCGCAGCCGCCGCAA
CTCTCCGAATGACGTCGTTGACAGCAGCAAGCGGGGAGCTTATCGAGGGG
ACGCTGCTAGCGCGCAGGGTGCAAAGGGCAAAAGAGGTGTAAAGGCGGCA
AGGGGAGGGGGAGGCCTCCGGCGGGGTCGGAGTCGAGGTCTGCCGGTAGG
AGAGGTGGCTGGTGACGGTTCATTGGCCCCGTCGGTCGCAGGGAAGCGGT
CGGGGTTGCGAAGGAGAGACGGCGCTGCGATGGTGGAGAGAGCAAACGAG
GGCGTAGTAGCGGGCAAGAAAGGTTCGCCGCCGCCGCCGGCTTCCGCGCT
GCAAGGGGGCAGCGGCAGAGGCGCCCCCAGGGGGTTGTCGGTGGAAACCC
GTCGAGGGAAGGCCCTCAGGGAGGGCGGAGGGGGAGCGGCGGCAGCAGCA
GCTGCTGCTGCTGCCGCGGCGGCGGCGGCAACCGAGGGCCAGCAGGCGGA
CACAACTTCTCGCGTGGCACGGCTATCGTTGTTGCACCAACAGTCTACTG
ATCGCGGAGGCGGCGGCAACCGTGGCGTGACGTGA
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