mRNA_Ecto-sp13_S_contig17380.5196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI) HSP 1 Score: 274 bits (700), Expect = 1.960e-82 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQ 390
GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQ
Sbjct: 1791 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQ 1920
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: A0A7S3UTV5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV5_HETAK) HSP 1 Score: 212 bits (540), Expect = 8.200e-63 Identity = 98/130 (75.38%), Postives = 114/130 (87.69%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQ 390
GVNFPAHLVVVKGTEFFDGK RYVDFPITD+LQM+GRAGRPQFDD AVA +LVHEPKK F++KFLY PFPVES L LHNH+SAE AGG+I+S++DAV+YLTWT++F RL+ NP++Y LED S EGVQ
Sbjct: 494 GVNFPAHLVVVKGTEFFDGKQGRYVDFPITDVLQMMGRAGRPQFDDTAVAAVLVHEPKKIFYQKFLYSPFPVESSLREYLHNHISAEVAGGSIKSKQDAVEYLTWTYFFRRLVMNPTYYHLEDPSPEGVQ 623
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: A0A7S1CMX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMX3_9STRA) HSP 1 Score: 196 bits (498), Expect = 4.620e-62 Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPA--SLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQV 393
GVN PAHLVVVKGTEFFDG+ RYVDF +TD+LQM+GRAGRPQFD VA ILVHEPKKNF++KFLYEPFPVES+L A +LH+ L+AE AG AI+SR DA +YLTWT++F RL ANPS+Y ED S +G++V
Sbjct: 2 GVNLPAHLVVVKGTEFFDGRLGRYVDFAVTDVLQMMGRAGRPQFDTQGVAMILVHEPKKNFYRKFLYEPFPVESQLKAHHALHDALNAEIAGNAIKSRADAAEYLTWTYFFRRLCANPSYYDCEDGSPDGIRV 134
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: A0A7S2BB24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB24_9STRA) HSP 1 Score: 207 bits (526), Expect = 6.680e-62 Identity = 92/130 (70.77%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQ 390
GVNFPA LVVVKGTEFFDGKS RYVDFPITD+LQM+GRAGRPQFDD ++C+ V + KKNF+KKFLYEPFPVES L LHNH++AE AGG I++++DAV+YLTWT++F RLL NP++Y L ++ST+GVQ
Sbjct: 2 GVNFPARLVVVKGTEFFDGKSGRYVDFPITDVLQMMGRAGRPQFDDKGISCVFVEQSKKNFYKKFLYEPFPVESSLKDVLHNHMNAEVAGGTIKNKQDAVEYLTWTYFFRRLLVNPAYYHLHESSTDGVQ 131
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: UPI00053A131A (DExH-box ATP-dependent RNA helicase DExH14-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A131A) HSP 1 Score: 196 bits (498), Expect = 1.980e-60 Identity = 87/129 (67.44%), Postives = 106/129 (82.17%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGV 387
GVN PAHLV++KGTE+FDGK++RYVDFP+T++LQM+GRAGRPQFD H A ILVHEPKK+F+KKFLYEPFPVES L LH+H +AE G I ++ DAV YLTWT+ F RL+ANP++YGLE T E V
Sbjct: 19 GVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDETV 147
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA) HSP 1 Score: 210 bits (534), Expect = 4.300e-60 Identity = 92/130 (70.77%), Postives = 113/130 (86.92%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQ 390
GVNFPAHLVV+KGTE+FDGK+ RYVDFP+TD+LQM+GRAGRPQFD VACILVHEPKKNF KKFLYEPFPVES L LHNHL+AE +GG+++++ A++YLTWTF+F RL+ NP++Y LE+T+ E VQ
Sbjct: 1708 GVNFPAHLVVIKGTEYFDGKTSRYVDFPVTDILQMMGRAGRPQFDTRGVACILVHEPKKNFIKKFLYEPFPVESSLKDVLHNHLNAEVSGGSVQNKEQAMEYLTWTFFFRRLVMNPTYYSLEETAPEAVQ 1837
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: A0A835Z6M6_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M6_9STRA) HSP 1 Score: 209 bits (532), Expect = 7.870e-60 Identity = 97/129 (75.19%), Postives = 112/129 (86.82%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGV 387
GVNFPAHLVVVKGTE+FDG+ RYVDFP+TD+LQMIGRAGRPQFD HAVA ILVHEPKKNF KKFLYEPFPVES+L +L NH++AE AGGAI SR DA+ Y+TWT+ F R++ NPS+Y LEDT+ EGV
Sbjct: 1024 GVNFPAHLVVVKGTEYFDGRLGRYVDFPVTDVLQMIGRAGRPQFDTHAVAVILVHEPKKNFLKKFLYEPFPVESQLAGALPNHINAEIAGGAIGSREDALAYMTWTYLFRRIVQNPSYYQLEDTTPEGV 1152
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: A0A1Y1IBL7_KLENI (DEAD/DEAH box helicase domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBL7_KLENI) HSP 1 Score: 206 bits (523), Expect = 1.300e-58 Identity = 94/140 (67.14%), Postives = 117/140 (83.57%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQVRPPFLAGVL 420
GVNFPAHLVVVKGTE++DGKS+RYVDFPITD+LQM+GRAGRPQFDDH VA I+VHEPKK+F KKF+Y+PFPVES LP L +H++AE G I S +DAVDYLTWTF++ RL+ NPS+YGL +TS + + FL+G++
Sbjct: 1678 GVNFPAHLVVVKGTEYYDGKSKRYVDFPITDVLQMMGRAGRPQFDDHGVAVIMVHEPKKSFIKKFMYDPFPVESSLPDVLPDHVNAEVVAGTIGSTQDAVDYLTWTFFYRRLVMNPSYYGLAETSADAINA---FLSGLV 1814
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: A0A2R6WZK4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WZK4_MARPO) HSP 1 Score: 205 bits (522), Expect = 1.760e-58 Identity = 93/129 (72.09%), Postives = 108/129 (83.72%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGV 387
GVN PAHLVV+KGTEFFDGK +RYVDFPITD+LQM+GRAGRPQ+D H A ILVHEPKK+F+KKFLYEPFPVES L LHNH +AE G I S++DAVDYLTWT+ F RL+ NPS+Y LEDTS+E +
Sbjct: 1438 GVNLPAHLVVIKGTEFFDGKQKRYVDFPITDVLQMMGRAGRPQYDQHGKAIILVHEPKKSFYKKFLYEPFPVESSLAQHLHNHFNAEVVSGTIASKQDAVDYLTWTYLFRRLVMNPSYYNLEDTSSETI 1566
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Match: A0A0S4JCP4_BODSA (DEAD/DEAH box RNA helicase, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JCP4_BODSA) HSP 1 Score: 205 bits (521), Expect = 2.400e-58 Identity = 96/143 (67.13%), Postives = 116/143 (81.12%), Query Frame = 1
Query: 1 GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQVRPPFLAGVLRPV 429
GVNFPAH+VVVKGTEF+DGK++ YVDFPITD+LQMIGRAGRPQFD+ +A +L HEPKK F++KFLYEPFPVES L LH H++AE G I +R+DAVDYLTWTF F RL+ NPSFYGLED S + V V FL+G++R +
Sbjct: 1510 GVNFPAHMVVVKGTEFYDGKTKTYVDFPITDVLQMIGRAGRPQFDNEGIAQVLCHEPKKGFYRKFLYEPFPVESALHKQLHVHMNAEIVSGTISTRQDAVDYLTWTFLFRRLVKNPSFYGLEDRSPKAVTV---FLSGLVRKI 1649 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17380.5196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17380.5196.1 >prot_Ecto-sp13_S_contig17380.5196.1 ID=prot_Ecto-sp13_S_contig17380.5196.1|Name=mRNA_Ecto-sp13_S_contig17380.5196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp GVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVAback to top mRNA from alignment at Ecto-sp13_S_contig17380:1776..3676- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17380.5196.1 ID=mRNA_Ecto-sp13_S_contig17380.5196.1|Name=mRNA_Ecto-sp13_S_contig17380.5196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1901bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17380:1776..3676- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17380:1776..3676- >mRNA_Ecto-sp13_S_contig17380.5196.1 ID=mRNA_Ecto-sp13_S_contig17380.5196.1|Name=mRNA_Ecto-sp13_S_contig17380.5196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17380:1776..3676- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |