prot_Ecto-sp13_S_contig17379.5193.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17379.5193.1
Unique Nameprot_Ecto-sp13_S_contig17379.5193.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length123
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17379.5193.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 
Query:    1 DLIVKDQEWATPKSDGRHYHMLVPVEV 27
            DLIVKDQEWATPKSDGRHYHMLVPVEV
Sbjct:  459 DLIVKDQEWATPKSDGRHYHMLVPVEV 485
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17379.5193.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0U4_ECTSI2.110e-9100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..72
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 73..91
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..123
NoneNo IPR availableTMHMMTMhelixcoord: 92..111
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 21..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17379contigEcto-sp13_S_contig17379:1067..1435 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17379.5193.1mRNA_Ecto-sp13_S_contig17379.5193.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17379 1067..1437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17379.5193.1 ID=prot_Ecto-sp13_S_contig17379.5193.1|Name=mRNA_Ecto-sp13_S_contig17379.5193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
DLIVKDQEWATPKSDGRHYHMLVPVEVGCCVFLVHFLPSSLLSSVDAPLL
LAPTLSLSLLLLLLLLLLFSLLNPLSKCSKHPFSSQRQHQSFIIIMTLLL
MLQLLSPYSSIRYPKTAFLVTPH
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