mRNA_Ecto-sp13_S_contig17379.5193.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17379.5193.1
Unique NamemRNA_Ecto-sp13_S_contig17379.5193.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17379.5193.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 DLIVKDQEWATPKSDGRHYHMLVPVEV 81
            DLIVKDQEWATPKSDGRHYHMLVPVEV
Sbjct:  459 DLIVKDQEWATPKSDGRHYHMLVPVEV 485
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17379.5193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0U4_ECTSI2.110e-9100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17379contigEcto-sp13_S_contig17379:1067..1437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size371
Hectar predicted targeting categorysignal anchor
Exons1
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462906.5383687-CDS-Ecto-sp13_S_contig17379:1066..14351681462906.5383687-CDS-Ecto-sp13_S_contig17379:1066..1435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17379 1067..1435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17379.5193.1prot_Ecto-sp13_S_contig17379.5193.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17379 1067..1435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17379.5193.1

>prot_Ecto-sp13_S_contig17379.5193.1 ID=prot_Ecto-sp13_S_contig17379.5193.1|Name=mRNA_Ecto-sp13_S_contig17379.5193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
DLIVKDQEWATPKSDGRHYHMLVPVEVGCCVFLVHFLPSSLLSSVDAPLL
LAPTLSLSLLLLLLLLLLFSLLNPLSKCSKHPFSSQRQHQSFIIIMTLLL
MLQLLSPYSSIRYPKTAFLVTPH
back to top

mRNA from alignment at Ecto-sp13_S_contig17379:1067..1437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17379.5193.1 ID=mRNA_Ecto-sp13_S_contig17379.5193.1|Name=mRNA_Ecto-sp13_S_contig17379.5193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17379:1067..1437+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTCATCGTGAAAGATCAGGAGTGGGCGACCCCGAAATCGGACGGGCG
GCATTATCACATGCTCGTCCCCGTGGAGGTAGGGTGCTGCGTGTTTCTTG
TCCACTTTTTGCCGTCTTCTCTGCTGTCGTCGGTGGATGCTCCGTTGCTG
TTGGCGCCGACGCTGTCGCTGTCGCTGTTGTTGTTGTTGTTGTTGTTGTT
GCTTTTTTCACTGCTCAATCCGTTGTCGAAATGCAGCAAGCACCCCTTCT
CGTCCCAAAGGCAACACCAATCCTTCATCATCATCATGACGTTGTTGCTG
ATGCTGCAACTCTTGTCACCATACAGCTCTATTCGCTATCCAAAGACAGC
ATTTCTTGTCACCCCCCACCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17379:1067..1437+

>mRNA_Ecto-sp13_S_contig17379.5193.1 ID=mRNA_Ecto-sp13_S_contig17379.5193.1|Name=mRNA_Ecto-sp13_S_contig17379.5193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17379:1067..1437+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTCATCGTGAAAGATCAGGAGTGGGCGACCCCGAAATCGGACGGGCG
GCATTATCACATGCTCGTCCCCGTGGAGGTAGGGTGCTGCGTGTTTCTTG
TCCACTTTTTGCCGTCTTCTCTGCTGTCGTCGGTGGATGCTCCGTTGCTG
TTGGCGCCGACGCTGTCGCTGTCGCTGTTGTTGTTGTTGTTGTTGTTGTT
GCTTTTTTCACTGCTCAATCCGTTGTCGAAATGCAGCAAGCACCCCTTCT
CGTCCCAAAGGCAACACCAATCCTTCATCATCATCATGACGTTGTTGCTG
ATGCTGCAACTCTTGTCACCATACAGCTCTATTCGCTATCCAAAGACAGC
ATTTCTTGTCACCCCCCAC
back to top