mRNA_Ecto-sp13_S_contig173.5158.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig173.5158.1
Unique NamemRNA_Ecto-sp13_S_contig173.5158.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig173.5158.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.860e-81
Identity = 135/151 (89.40%), Postives = 141/151 (93.38%), Query Frame = 2 
Query:  422 QAMGTLLGTMFGFVSAALLTPIHDGEREHGLPAAPGVVMGSSLGVLAAYSAGEGTQPLRRLVYLLLLSVGAAAVTTTACSWLAGDVVRNAGSVGIMVLATVASLGSTAVFTIDTHNMLLTRVATAAAFDDRERHEGLSHLHEESFVDLKAV 874
            QAMGTLLGTMFGFVSAALLTPI  GEREHGLPAAPGV+MGSSLGVLAAYSAGEGTQPLR+L+YLLLLSVGAAAVTT ACSWL GDV++N GSVGIMVLATVASLGSTAVFTID HNMLLTR ATAAAFDDRERHEGL HL EES +DLKAV
Sbjct:   14 QAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLQEESLMDLKAV 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig173.5158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI2.860e-8189.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig173contigEcto-sp13_S_contig173:16932..19274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1276
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Cds size570
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig173.5158.1prot_Ecto-sp13_S_contig173.5158.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig173 17239..18875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.7392132-UTR-Ecto-sp13_S_contig173:16931..172381681462903.7392132-UTR-Ecto-sp13_S_contig173:16931..17238Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig173 16932..17238 +
1681462903.800801-UTR-Ecto-sp13_S_contig173:18875..192741681462903.800801-UTR-Ecto-sp13_S_contig173:18875..19274Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig173 18876..19274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.7500985-CDS-Ecto-sp13_S_contig173:17238..172761681462903.7500985-CDS-Ecto-sp13_S_contig173:17238..17276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig173 17239..17276 +
1681462903.7602236-CDS-Ecto-sp13_S_contig173:17771..177881681462903.7602236-CDS-Ecto-sp13_S_contig173:17771..17788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig173 17772..17788 +
1681462903.7707064-CDS-Ecto-sp13_S_contig173:17798..179681681462903.7707064-CDS-Ecto-sp13_S_contig173:17798..17968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig173 17799..17968 +
1681462903.7815213-CDS-Ecto-sp13_S_contig173:18346..185021681462903.7815213-CDS-Ecto-sp13_S_contig173:18346..18502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig173 18347..18502 +
1681462903.7912893-CDS-Ecto-sp13_S_contig173:18686..188751681462903.7912893-CDS-Ecto-sp13_S_contig173:18686..18875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig173 18687..18875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig173.5158.1

>prot_Ecto-sp13_S_contig173.5158.1 ID=prot_Ecto-sp13_S_contig173.5158.1|Name=mRNA_Ecto-sp13_S_contig173.5158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MTYFNQHVGQGCREDRACMFLRLLRHRVLLIINTCSLAQAMGTLLGTMFG
FVSAALLTPIHDGEREHGLPAAPGVVMGSSLGVLAAYSAGEGTQPLRRLV
YLLLLSVGAAAVTTTACSWLAGDVVRNAGSVGIMVLATVASLGSTAVFTI
DTHNMLLTRVATAAAFDDRERHEGLSHLHEESFVDLKAV*
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mRNA from alignment at Ecto-sp13_S_contig173:16932..19274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig173.5158.1 ID=mRNA_Ecto-sp13_S_contig173.5158.1|Name=mRNA_Ecto-sp13_S_contig173.5158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig173:16932..19274+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACGCACCGCGCGAGATACCACCTGGCCTACCAGCCTGCTCAGCACAC
CATCCTCCCTGAGAAGAAACACCTGTGACCCTTGCATGCCTACTTCAACA
AAGTCTAGAGTCTAGACCCAGCCTAGAGGGCTTATGTGTAGAGGAGCGCA
GAAGTGGGGAGCGTGAGTGTGGGAGTGGGATTGAAAACGCGGAGGAACCT
CTGCGGAACCTAAGGAACCCACCAATAAGACCGCATCTCTCCGCCGAGCC
GGCAAGATCCTCTTGCAGACTGGGCAGCAAGACTGGGTAGCATGGCTGGG
ACAATGGATGACCTACTTCAACCAACATGTTGGGCAGGGATGCAGGTGTG
TAGTGTCTCGTAGTTTTTTGTCATAGACCCCGTGCGCCACACGCAAGGCA
AATCAGCACAAACATTGACATTTACGACGCGGTAGTTGTAGGAAGCTGTG
TGTACAGCAGTGGTAGTCAAATCTACAGGACGTCAAAACATGTACTCCTT
ATACGTGCCCCGCACCGCCCCGGGTACAGCACTATCGTAGGTTGCATAAG
ATATCAACCCCCTGGACCGAGTTCAAAACTCGATTACTCGGCAGGAAAAA
CAGTGGCGGTGCCGGAAATGGTGGCGTTGGCACTGTCTCGTCGAGAGCTT
TCCCAACACGTGCAGCTGTGTCACTTTGATGTCGGCATCCTCCTCGTGCC
ACACTTGAGGTTTGAAATTCAGTCCAGGGAGGTGTGGTATCTTATGCAAT
TTACCGTACACACCAAGGTATGCCAAGATATATATGCAGCAACTTATTCT
CCGGAATGGCCTTCCCTACTGTGCGACACTCCTTGTACAGGGAGGACCGC
GCTTGTAGTGACCGTAGTGTTTTTGAGGCTACTACGGCACCGAGTCTTGC
TGATCATCAATACCTGCTCCCTTGCACAGGCGATGGGAACCCTGCTGGGT
ACGATGTTTGGATTTGTGTCTGCTGCTCTTCTCACGCCGATCCACGACGG
GGAGAGAGAACACGGGTTGCCAGCTGCGCCTGGCGTGGTGAGTCTCCATT
GATAACTCGAGCACCGCCCGTGTTTTCCCAGCGAACCAAGCAAGCTTCAC
CGTGTGCAGTCTTCTTGCTCAGCAACGCGCCCAATATTGTTTTGCACGTG
TAGACTGTGATTTTGACTCCGCAGCCTCTTCGTCGTTACCCTTCACACGC
GTTCTTGTACCTCTCTTTTTCTGTTTCCGTATCATGGGCAGGTCCTCACT
GTCCTGTGGTACTCAGTTTGATACCAACTCTGCCCAACACGCTGTTGTGG
AATGTGTGGGATGTGTCCACTCCTGCAGTCGAACCCAATCAATCCCACCA
AGTTCCAACCGTTGACTAATTGCTTAGGTTCTAGCCCTGCCTTATCGATG
TGACGATGATTGCAGGTTATGGGATCCTCTCTCGGGGTACTTGCAGCCTA
TTCGGCAGGGGAAGGGACCCAGCCCCTGCGACGGCTGGTTTACCTCCTGC
TGCTCAGCGTGGGGGCAGCCGCAGTGACAACCACAGCATGTAGCTGGCTA
GCGGGCGATGTCGTACGGAATGTGAGAGCGAATGCAGCAGAATGATGCTC
GAAGTTGTTGAGAACGTGTGGACAAAATCTTTGTGTTCCACTCAAGACGC
CATTACCGTAGTTTTTTATGCATATATCACACGCTTTGTCGTCCATGTGA
ACGTTTAGTGCCGTCGTTTCTTGAATCGACCCACGGTTGGGTGCTTGGTG
CCCAGGCCGGGAGCGTCGGCATCATGGTGCTGGCGACAGTGGCGTCGCTA
GGCTCGACGGCGGTCTTCACCATTGACACGCACAACATGCTGCTCACACG
AGTAGCCACGGCTGCGGCATTCGATGACCGCGAGCGACACGAAGGATTGT
CACACCTCCACGAGGAGTCCTTCGTGGATCTCAAGGCGGTCTGAAGTGTC
CGACTTCAAGTGGTGTGGTCAGGAGCGTTTGGCTTCAGTAGTTTTGCGGC
GGGCTGTTTGTTTCCTTGTAAATGTACAAAGCACAAGTGTGTTACGTTCA
GAGCGGAAGTGTTAAAGGCCGATGCGGTAAGGCCACGTTGGAGGGCTTGT
ACTCGTATGATCTGGTATGATTAGAACGAAGAGCTTGCTGTTGGAGTGTG
CAAGTTTGTCGGCGAAGGGCCCTCTCACGTTATGCTACATACATGAACTC
GACACGAGGTTTGGGGCACCCAGCGCAAAACGCGGCCATTGACGCAGATT
TGTCCTCGCACTTTACTTGCCGTGCGGTAAGGTCATATGCGTCGGCTATG
TGGGTTGATTACACCGCCGCACAGCCTACTGCTTGTCTTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig173:16932..19274+

>mRNA_Ecto-sp13_S_contig173.5158.1 ID=mRNA_Ecto-sp13_S_contig173.5158.1|Name=mRNA_Ecto-sp13_S_contig173.5158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig173:16932..19274+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTACTTCAACCAACATGTTGGGCAGGGATGCAGGGAGGACCGCGC
TTGTATGTTTTTGAGGCTACTACGGCACCGAGTCTTGCTGATCATCAATA
CCTGCTCCCTTGCACAGGCGATGGGAACCCTGCTGGGTACGATGTTTGGA
TTTGTGTCTGCTGCTCTTCTCACGCCGATCCACGACGGGGAGAGAGAACA
CGGGTTGCCAGCTGCGCCTGGCGTGGTTATGGGATCCTCTCTCGGGGTAC
TTGCAGCCTATTCGGCAGGGGAAGGGACCCAGCCCCTGCGACGGCTGGTT
TACCTCCTGCTGCTCAGCGTGGGGGCAGCCGCAGTGACAACCACAGCATG
TAGCTGGCTAGCGGGCGATGTCGTACGGAATGCCGGGAGCGTCGGCATCA
TGGTGCTGGCGACAGTGGCGTCGCTAGGCTCGACGGCGGTCTTCACCATT
GACACGCACAACATGCTGCTCACACGAGTAGCCACGGCTGCGGCATTCGA
TGACCGCGAGCGACACGAAGGATTGTCACACCTCCACGAGGAGTCCTTCG
TGGATCTCAAGGCGGTCTGA
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