mRNA_Ecto-sp13_S_contig173.5157.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: D7G8H9_ECTSI (VCBS protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H9_ECTSI) HSP 1 Score: 443 bits (1140), Expect = 1.210e-145 Identity = 231/242 (95.45%), Postives = 235/242 (97.11%), Query Frame = 1
Query: 1 FGYLRRTSTWPTTDADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNS------LPSILLNSGGTALYNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKPGGESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 708
FGYLRRTSTWPTTD+DLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNS LPSILLNSGGTALYNGGNG+AVLEFLYTVGEGESSGGLDTAVVG D+T+TTTILLPAEGAIFDAALEAPAVVTLPKPGGESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG
Sbjct: 126 FGYLRRTSTWPTTDSDLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSTALNESLPSILLNSGGTALYNGGNGTAVLEFLYTVGEGESSGGLDTAVVGSDVTATTTILLPAEGAIFDAALEAPAVVTLPKPGGESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 367
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A7W1JAD1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1JAD1_9BACT) HSP 1 Score: 121 bits (304), Expect = 3.780e-28 Identity = 91/236 (38.56%), Postives = 119/236 (50.42%), Query Frame = 1
Query: 43 ADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSG---GTALYNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKPGG------ESNIII----DTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLD-LGDADGYASFEALKDGTNNTLVFVYVVREG 708
A LTLP PG++GSL+ +V+DT V V+T+ ADGVYGVG +P+ VTF AV V P+I L +G T Y G+GSA L F YT+ G S GLD LL G I D A A A ++L PG SNII+ DT P V+ VTS LA+G Y G + +++ + PV V G P L L+ +G + + + TL F Y V G
Sbjct: 248 AVLTLPAPGAAGSLAANAAIVIDTTAPVVTGVDTTKADGVYGVGVVVPITVTFNKAVVVTGTPTIQLETGVSDTTVSYTSGSGSATLLFTYTIAAGHDSSGLDYIAAS---------LLLNGGTIKDVAGNA-ANLSLAVPGAAGSLAANSNIIVNTSADTVAPTVVSVTSPLANGTYVDGQIIPVVVTMSEPVTVTGTPFLILNSIGSSHTTPTATYVGGSGTTTLAFTYTVLAG 473
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A2E4JTG3_9ARCH (Fibronectin type-III domain-containing protein n=1 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A2E4JTG3_9ARCH) HSP 1 Score: 117 bits (292), Expect = 2.930e-26 Identity = 87/231 (37.66%), Postives = 120/231 (51.95%), Query Frame = 1
Query: 43 ADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSGGTAL---YNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKP------GGESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 708
A LTLP PGSSGSL +V+D V AV++S DG Y +G+ + + VTF+ VSV+ P + L +G T Y G+G++ L F +T+ G +S LD T TT + L G+I DAA + A V LP P G +++D PLV V+ST D Y G + I + +T V V G P+L L+ G +D + A GT+ TL F YVV G
Sbjct: 1319 ATLTLPVPGSSGSLGAEKALVIDGIAPIVSAVSSSATDGTYSIGDTLDISVTFSEEVSVSGTPQLTLETGTTDAVVDYTSGSGTSTLTFKFTIARGNTSSDLD-------YTDTTALALNG-GSIMDAAGNS-ANVILPLPDSTGSLGYTKALVVDGGAPLVSSVSSTAVDSSYIIGDTLAITMVFTEAVAVTGTPKLTLETGTSDAVIYYAA-GSGTS-TLSFEYVVASG 1538
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A7K4HJX8_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A7K4HJX8_9ARCH) HSP 1 Score: 115 bits (288), Expect = 8.390e-26 Identity = 78/233 (33.48%), Postives = 113/233 (48.50%), Query Frame = 1
Query: 40 DADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSGGTAL---YNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKPG------GESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNT-LVFVYVVREG 708
DA++TLP PGS GSLS +++ T + V+++ DG YG GE I + + F+ +V V P + L +G Y GNG++ L F YTV G +S LD V L G ++ AV+TLP PG ++IID P + V+ST DG Y G ++I I ++ V V G P+L L+ G D + + G+ T L F Y+V G
Sbjct: 375 DANVTLPTPGSLGSLSDNKDIILKTISPTITDVSSTKPDGTYGAGEIINITINFSESVFVTGTPQLTLETGAVDAVVDYTSGNGTSTLTFTYTVTSGHTSSDLDYESVNA---------LSLNGGSIKDSVGNDAVLTLPTPGIAGSLGSNKDLIIDATDPAITSVSSTKTDGIYTVGETIDITISFSESVDVTGTPQLTLETGVVDAVVDYTS---GSGTTILTFTYIVASG 595
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A7Z9UGP7_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9UGP7_9BACT) HSP 1 Score: 113 bits (283), Expect = 4.680e-25 Identity = 83/234 (35.47%), Postives = 117/234 (50.00%), Query Frame = 1
Query: 34 TTDADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSGGT---ALYNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKPGGESNI------IIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 708
T +ADLTLPEP S+GSL+ +++D V AV++S DG Y +G+ + + VTF V V P + L +G T A Y G G+ L F YTVG G + L+ ++T L G I DAA +TLP+ GG ++ +ID P V V+ DGYY G + + I ++ V V GVP+L L+ G D + + GT TL F Y+V G
Sbjct: 426 TNNADLTLPEPDSTGSLAATKNIIIDGNPPTVTAVSSSTQDGTYNIGDLVAITVTFNENVMVTGSPQLTLETGATDAIASYTSGTGTTTLTFNYTVGLGHENSDLEY--------NSTNALALNSGTIVDAAGNN-VTLTLPEIGGTGSLANNKALMIDGVVPTVNSVSVNTVDGYYKAGDTLGLTITFSEIVAVTGVPQLVLETGSNDAVIYYNS-GSGTV-TLNFNYIVESG 648
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A1V6BQR2_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium ADurb.Bin133 TaxID=1852909 RepID=A0A1V6BQR2_9SPIR) HSP 1 Score: 112 bits (280), Expect = 1.140e-24 Identity = 74/227 (32.60%), Postives = 114/227 (50.22%), Query Frame = 1
Query: 40 DADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSGGTALYNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKP----GGESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 708
D+ L L P + SL + +DT V+ V ++ + +Y G+ +P+L+ F+ V V +P++ LNSG Y+ G G+ L F YTV GE++ V +D ++ L I A +A ++T P G NI +DT P VL V S AD Y G+ + I ++ PV V G P+L L+ GD D YA++ ++ GTN + F Y V+ G
Sbjct: 916 DSSLVLSAPSTPRSLGFNKTIKIDTIRPTVVNVTSTSPNAIYKNGDALPILIDFSEVVDVTGIPTLSLNSGAVVSYSSGTGTTTLLFNYTVANGENA-------VDLDYPDKNSLSLNGGKIIDKAGNDADLILTNPGTEKSLGYNKNITVDTTKPKVLSVDSDNADMSYNAGNVISIKVELDEPVTVTGTPKLLLETGDIDRYATY-SIGSGTN-IIKFSYTVQAG 1133
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A0P1B364_PLAHL (YHYH domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B364_PLAHL) HSP 1 Score: 112 bits (279), Expect = 1.620e-24 Identity = 76/245 (31.02%), Postives = 123/245 (50.20%), Query Frame = 1
Query: 10 LRRTSTWPTTDADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSGGT----ALYNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAI--FDAALEAPAVVTLPKPG------GESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 708
++R +T P TDADL+LP S SLSG + + RV+ +N DG Y G+ + + + F+ V V P +LL +GG A + GNG++ L F+YTV G++ ++LLP I + A+ +P PG I ID+ PP+V+++ S++ DG Y GH +++L+ ++ VVV G+P + L++ G + GTN TL F Y+ ++G
Sbjct: 3173 IKRNATRPETDADLSLPPVKSPNSLSGTRTIAIKPTRPRVLQLNFLTPDGTYYPGDTVSIEILFSLPVVVLESPVLLLETGGESPMQATFESGNGTSTLTFVYTVYVGDAH-------------FVQSLLLPGSSEIKRLSTSPVTSALTVIPAPGTPGSLSASRTIKIDSSPPIVIDIQSSVVDGTYDVGHPIDLLLVFSRSVVVTGIPEVLLNVLSEYGRTARYVDGSGTN-TLRFTYIPQKG 3403
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: X0XEV8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XEV8_9ZZZZ) HSP 1 Score: 106 bits (264), Expect = 2.640e-24 Identity = 72/197 (36.55%), Postives = 106/197 (53.81%), Query Frame = 1
Query: 43 ADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSGGTAL---YNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKPG------GESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPR 606
A LTLP PG++GSL +++DT+ + + V+++ ADG Y VGE I + +TF+ +V + +P + L +G Y G+G++ L TV G +S LD ST + L + G I D + AV+TLP PG NIIIDTE + EV+ST +DG Y G +EI I ++ V V G P+
Sbjct: 56 AVLTLPSPGTAGSLGSNKNIIIDTEASTITEVSSTKADGTYTVGEIIQITITFSESVDITGMPQLTLETGAADAIVDYTSGSGTSTLXXXXTVTSGHTSPDLD-------YISTGALSLNS-GTIEDTGGNS-AVLTLPIPGTAGSLGSNKNIIIDTEASTITEVSSTKSDGTYTVGEIIEITITFSESVDVTGTPQ 243
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A418AWM7_9STRA (YHYH domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AWM7_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.840e-24 Identity = 86/250 (34.40%), Postives = 126/250 (50.40%), Query Frame = 1
Query: 4 GYLRRTSTWPTTDADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSI---------LLNSGGTALYNGGNGSAVLEFLYTVGEGESSGGLDTAVVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKPG------GESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 708
G + + S+ PT A LTLP PGS+GSLSG + V ARV++V T GVY VG+ + ++VTF+ AV + +I + A Y G+G+AV F Y V + + A T+ + + A A + LP+PG S++ IDT PP +++VT+ + DG YGPGH + I + ++ PVVV G P LRL + A++ A T + L FVYVV+ G
Sbjct: 639 GTILQFSSSPTVSASLTLPVPGSTGSLSGNARLSVCMSCARVLSV-TGSPSGVYTVGDALSMVVTFSEAVRFDRPTAIPPPTMYIRLAMALERVASYVSGSGTAVWVFSYQVQPNDDVYPFEVA---------NTLAMYGAKVVSVARPTYLASLRLPQPGRPFNFSASSSVRIDTTPPKIIQVTTPIPDGTYGPGHAIPIDVVFSVPVVVAGAPVLRLAVLPTPQLATYNA-PGSTPSVLRFVYVVQPG 877
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Match: A0A3L6UT90_9STRA (YHYH domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UT90_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.730e-24 Identity = 82/247 (33.20%), Postives = 123/247 (49.80%), Query Frame = 1
Query: 22 STWPTTDADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSLPSILLNSGG-----------------TALYNGGNGSAVLEFLYTVGEGESSGGLDTA-VVGIDITSTTTILLPAEGAIFDAALEAPAVVTLPKPGGESNIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREG 708
S+ PT A LTLP PGS GSLSG + + V RV++V T GVY G + ++VTF+ AV P ++ A Y G+G+A F+Y + + ++ A + + ++ P + A+L P+V L S+I IDT PP V++VT+ + DG YGPGH + I + ++ PVVV G P LRL + A A++EA T++ + F YVV+ G
Sbjct: 703 SSSPTVRARLTLPVPGSVGSLSGKSRLTVCMTCPRVVSV-TGSPTGVYTAGHTLSIIVTFSEAVQFAPSPVSTTSTTAPVRIPTLNIRLAMAFERVATYTSGSGTATWTFVYPIQISDDVYPVEVANMYALYGDQVVSVARPT----YVASLRLPSVGQLNSLSATSSIRIDTSPPTVVQVTTPVPDGEYGPGHVIAIDVAFSVPVVVTGTPVLRLAVLPAPQAATYEATAGATSSVVRFTYVVQPG 944 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig173.5157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig173.5157.1 >prot_Ecto-sp13_S_contig173.5157.1 ID=prot_Ecto-sp13_S_contig173.5157.1|Name=mRNA_Ecto-sp13_S_contig173.5157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp FGYLRRTSTWPTTDADLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLback to top mRNA from alignment at Ecto-sp13_S_contig173:3924..5675- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig173.5157.1 ID=mRNA_Ecto-sp13_S_contig173.5157.1|Name=mRNA_Ecto-sp13_S_contig173.5157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1752bp|location=Sequence derived from alignment at Ecto-sp13_S_contig173:3924..5675- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig173:3924..5675- >mRNA_Ecto-sp13_S_contig173.5157.1 ID=mRNA_Ecto-sp13_S_contig173.5157.1|Name=mRNA_Ecto-sp13_S_contig173.5157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig173:3924..5675- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |