mRNA_Ecto-sp13_S_contig17296.5154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17296.5154.1
Unique NamemRNA_Ecto-sp13_S_contig17296.5154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17296.5154.1 vs. uniprot
Match: D8LN09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN09_ECTSI)

HSP 1 Score: 485 bits (1248), Expect = 4.310e-167
Identity = 343/382 (89.79%), Postives = 348/382 (91.10%), Query Frame = 3 
Query:   33 MQKPRGRATFALLCYYLGAATTTRTLPTAVSGFHHPCAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSADYSEYGYEPEFELQGEEPNADEETLASWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPENDIGAMIGIIPGKKFVATTKITRRVIESAGDTKIFEHEQGQATGGEGQGAVGYEPEACPQPVVETLFSDSFRGGNGTQARIVGNAYTSSENLAVAGRGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDADGGEGVPVPEAAAAATRSTSIRRVFVVREGLDRLPPDDADKE 1178
            MQKPRGRATFALLCYYLGAATTTRTLPTAVSGFHHPCAAR          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSADYSEYGYEPEFELQGEEPNADEETLA WRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPE+DIGAMIGIIPGKKFVATTKITRRVIESA DTKIFEHEQGQATGGEGQGAVGYE EACPQPVVETLFSDSFRGGNGTQ  +VGNAYTS+E LAVA  GADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDA+                STSIRRVFVVREGLDRLPP+DADKE
Sbjct:    1 MQKPRGRATFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQ--VVGNAYTSAETLAVAAGGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAEXXXXXXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKE 380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17296.5154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN09_ECTSI4.310e-16789.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17296contigEcto-sp13_S_contig17296:790..3717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score485.0
Seed ortholog evalue3.3e-134
Seed eggNOG ortholog2880.D8LN09
Model size1178
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2E86R@1,2SEQ5@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000940.1
Cds size1146
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17296.5154.1prot_Ecto-sp13_S_contig17296.5154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17296 790..3685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.35234-CDS-Ecto-sp13_S_contig17296:789..10681681462903.35234-CDS-Ecto-sp13_S_contig17296:789..1068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17296 790..1068 -
1681462903.3656616-CDS-Ecto-sp13_S_contig17296:1525..16941681462903.3656616-CDS-Ecto-sp13_S_contig17296:1525..1694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17296 1526..1694 -
1681462903.3743584-CDS-Ecto-sp13_S_contig17296:2219..23431681462903.3743584-CDS-Ecto-sp13_S_contig17296:2219..2343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17296 2220..2343 -
1681462903.383878-CDS-Ecto-sp13_S_contig17296:2836..30051681462903.383878-CDS-Ecto-sp13_S_contig17296:2836..3005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17296 2837..3005 -
1681462903.4014184-CDS-Ecto-sp13_S_contig17296:3280..36851681462903.4014184-CDS-Ecto-sp13_S_contig17296:3280..3685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17296 3281..3685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.4125004-UTR-Ecto-sp13_S_contig17296:3685..37171681462903.4125004-UTR-Ecto-sp13_S_contig17296:3685..3717Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17296 3686..3717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17296.5154.1

>prot_Ecto-sp13_S_contig17296.5154.1 ID=prot_Ecto-sp13_S_contig17296.5154.1|Name=mRNA_Ecto-sp13_S_contig17296.5154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp
MQKPRGRATFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRSAGQA
LSPPPKQQLSNQRRSPTPVEATQQQARGWGSSLMAGGGSVGGSGGSRSDA
ASRGGGSRRRSPGRVTAASSSVLQCAAGDDEDDNYGSADYSEYGYEPEFE
LQGEEPNADEETLASWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAE
DLSAGSDPENDIGAMIGIIPGKKFVATTKITRRVIESAGDTKIFEHEQGQ
ATGGEGQGAVGYEPEACPQPVVETLFSDSFRGGNGTQARIVGNAYTSSEN
LAVAGRGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDADGGEGVPVPE
AAAAATRSTSIRRVFVVREGLDRLPPDDADKE
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mRNA from alignment at Ecto-sp13_S_contig17296:790..3717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17296.5154.1 ID=mRNA_Ecto-sp13_S_contig17296.5154.1|Name=mRNA_Ecto-sp13_S_contig17296.5154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2928bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17296:790..3717- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATCAAGTCGACGGCGGCGGCAACCGCATCATGCAGAAGCCAAGAGGC
AGGGCGACTTTCGCACTCCTCTGCTACTACCTGGGAGCAGCAACTACAAC
AAGAACCCTCCCGACCGCGGTGTCCGGCTTCCACCACCCTTGCGCCGCCC
GCCGCGTCCGCCGCCGCTCAGCGGGGCAGGCGCTAAGCCCTCCTCCCAAG
CAACAGTTGTCCAACCAAAGAAGGAGCCCCACGCCTGTGGAAGCTACGCA
ACAGCAAGCCCGGGGCTGGGGGTCAAGCTTGATGGCCGGCGGAGGTAGCG
TCGGCGGCAGCGGTGGCTCCAGGAGCGACGCCGCTTCCCGTGGTGGAGGT
AGCAGGCGGAGATCTCCGGGGCGGGTGACGGCGGCTTCCTCCTCGGTGCT
GCAGTGCGCCGCTGGAGACGACGAAGACGACAATTATGTGAGTATCGGCA
GCAGCAGCAGTAGTGTCGGCGGTAAGTGGCTTCTGCCTACAGATACGGGG
CAGTCTTTTTGGTACTCATGTTGTTCGGTTGTGGCGGTTTTTTGGTGGTG
TTGGTGTATGGTTTCGTTAATATCTTGTGTCGACCTGCCTGGTTGAGGGG
GCTGTCTTTTTGGTACGCATGCGGTTCGGTTTGGTGGCGTTTTCTATGGG
TGTTGGTAGATAGGCTCGTCAACATCTTGTGTCGGCCCTCACTTGCGCGG
ACGGGGGCGCAGGGGAGCGCTGACTACTCCGAGTACGGCTACGAACCGGA
GTTCGAGCTGCAGGGGGAGGAGCCGAACGCGGACGAAGAGACGCTGGCGA
GTTGGCGGTTGGAGAAGCTTCTTGCCAACGACCGGTGGCAGTTCGGCAAG
TACGGGACCCAAAACGTGGGCAACTGGATCGGTGAGTGAGGGGCTCCGGT
GGTGTTGCGCTTTTTCTTCTTTTTTCAGCCTCGTTTCTGGAATACGCAAG
GTGCAACACCAAGTCTGCGATGGCTATGGAGCGCGGCAGCATGTGTGCAT
GTCGTCAGTCGTGCCGATGTGTCACTTCGTATTGGCGGATGAAATTGTTG
TGTGTCCAACTAAACAGGACCCGCCGCTCATAGAACCGGGCGCTTCCGTG
CTTCAATTCAAGCACGGCTTGTGAGATCGTTTTTGTGTGCTTGGCCTCTC
CTCCCCGAGATGAGCCGTTAACCTCCGCCGGCTCCCCGTCCGTGCGCCGC
ACGAAAAGTAGCGAATAGTTCTTCGAGTTTGAGGGGAAACCCGTTTCTTT
CCGCAGATGTGTCGGTGTTTTGTTTGCATTTGCGGGGGGAGTTGTAGCGC
GCGCGTTTTTGGCGCGGCTGACTGATTTCGTGAATTATCTCGCTTGATGT
TGTCGTCGTTTGCGTTTATTTCAGGGAGCTGGCAGGAGTACGTCGCGGAA
GACCTCAGCGCGGGGTCAGACCCAGAGAACGACATCGGGGCTATGATCGG
CATCATTCCGGGAAAGAAGTTCGTGGCCACCACCAAGATCACCCGCAGGT
TTGTGTGCTTATTCGCGGATGGAAACGCGTTTTTGGCACCCCGTTTGTAT
TTTTTCAAGTATTTTTTTGCCCAGCAACCATAGAATTATGGCTCTCATGT
CTTGTCCGTGTAGTGCATGCATGGCGTCGGGAAACACGGCCCTCGTCGTG
AGAAACCAACCGTCTGTTTAGGAAACAAACCCTTTGCCTATTCGAAGGAC
TACATTGCGCCTTTTTCCTGTGCGGAATGTCGTCAAATCGGCACGCGCGT
CATGAGGGCCTGAGAAAGCAAATTCGGTAGACAGACAAACAGATGGTTTT
GCTCAATCTCAGTATCCACAACGAACACCTCTCCCTCTGGTGCACACGTG
TTACCCTTCGATACTGTTATCTGTTTTCCGGCACGACCCCTCGACGACAA
CATCAACAACAACAACAACAACAACAACAACAACAACGAGAGTTGGGCTC
AGCCAAGATGCGCCGACGGGGTGTCCTCACACGCCCCCGTGTCTCATGTT
GTTCTCACTTCAACAACGCGCAGGGTTATCGAGTCGGCGGGAGACACCAA
GATATTCGAGCACGAGCAGGGGCAGGCGACGGGGGGGGAAGGGCAGGGGG
CGGTGGGATACGAACCCGAGGCGTGTCCGCAGCCGGTAGTCGAGACCCTC
TTCTCCGACTCGTTCCGGGGCGGCAACGGCACCCAGGCGCGTGTCTTGAA
CGTACCGGATTTTTAGGATCGCGCGTGTCTTCGTTTGGCGAGCGGGGGGG
GGGGCGTCGTAGTCATACATGACATTCTCCTCCCTGTCGGTGTATTTTTT
CCTGACACGTTGATGTAGTGGGTAGTGGGGTAGTGGTGTTGGCAGAACGG
GGTCTTAGTTCGCCCTAACGAGAGGTAGAGAGAAATCGATCCTCGTCGGC
AATCACGTGGTCGATTACCGTCGTGTCAAGTGTGTGTTTGGGGGGGTGTT
GGTTGACAGCTGCCTGCCTATCCGGCTGTTGTCGGGTCTTTGACGATACT
GCTGTTGTTCCACCTCTGCTGCTGCTATTGCTATTGCCGCTGTTGCGCTA
TCCTTCGACGCGTGTGCCACAACGGCGTCATCGGCCGCAACCGCCACCGC
TACCAACAACAACCCGGTCCTCCTTCATCTCACCACGGACGCGAACAAGA
TCGTCGGGAACGCGTACACCTCGTCGGAAAATCTGGCAGTGGCTGGGCGG
GGCGCGGATGGCCCCTGGATAGAGGTAGGCCTTCGGGTCCAGGACGTCCG
AATGCGGTGCGTTTTCGAGTATGGACCGGGAGCGGGGGGCTCCGTCGACG
CAGACGGGGGGGAAGGGGTACCGGTACCAGAGGCAGCAGCAGCAGCAACA
AGGTCGACGAGCATCCGGAGGGTGTTTGTGGTCCGGGAGGGGCTCGACAG
ACTGCCGCCGGACGACGCCGATAAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17296:790..3717-

>mRNA_Ecto-sp13_S_contig17296.5154.1 ID=mRNA_Ecto-sp13_S_contig17296.5154.1|Name=mRNA_Ecto-sp13_S_contig17296.5154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17296:790..3717- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAAGCCAAGAGGCAGGGCGACTTTCGCACTCCTCTGCTACTACCT
GGGAGCAGCAACTACAACAAGAACCCTCCCGACCGCGGTGTCCGGCTTCC
ACCACCCTTGCGCCGCCCGCCGCGTCCGCCGCCGCTCAGCGGGGCAGGCG
CTAAGCCCTCCTCCCAAGCAACAGTTGTCCAACCAAAGAAGGAGCCCCAC
GCCTGTGGAAGCTACGCAACAGCAAGCCCGGGGCTGGGGGTCAAGCTTGA
TGGCCGGCGGAGGTAGCGTCGGCGGCAGCGGTGGCTCCAGGAGCGACGCC
GCTTCCCGTGGTGGAGGTAGCAGGCGGAGATCTCCGGGGCGGGTGACGGC
GGCTTCCTCCTCGGTGCTGCAGTGCGCCGCTGGAGACGACGAAGACGACA
ATTATGGGAGCGCTGACTACTCCGAGTACGGCTACGAACCGGAGTTCGAG
CTGCAGGGGGAGGAGCCGAACGCGGACGAAGAGACGCTGGCGAGTTGGCG
GTTGGAGAAGCTTCTTGCCAACGACCGGTGGCAGTTCGGCAAGTACGGGA
CCCAAAACGTGGGCAACTGGATCGGGAGCTGGCAGGAGTACGTCGCGGAA
GACCTCAGCGCGGGGTCAGACCCAGAGAACGACATCGGGGCTATGATCGG
CATCATTCCGGGAAAGAAGTTCGTGGCCACCACCAAGATCACCCGCAGGG
TTATCGAGTCGGCGGGAGACACCAAGATATTCGAGCACGAGCAGGGGCAG
GCGACGGGGGGGGAAGGGCAGGGGGCGGTGGGATACGAACCCGAGGCGTG
TCCGCAGCCGGTAGTCGAGACCCTCTTCTCCGACTCGTTCCGGGGCGGCA
ACGGCACCCAGGCGCGTATCGTCGGGAACGCGTACACCTCGTCGGAAAAT
CTGGCAGTGGCTGGGCGGGGCGCGGATGGCCCCTGGATAGAGGTAGGCCT
TCGGGTCCAGGACGTCCGAATGCGGTGCGTTTTCGAGTATGGACCGGGAG
CGGGGGGCTCCGTCGACGCAGACGGGGGGGAAGGGGTACCGGTACCAGAG
GCAGCAGCAGCAGCAACAAGGTCGACGAGCATCCGGAGGGTGTTTGTGGT
CCGGGAGGGGCTCGACAGACTGCCGCCGGACGACGCCGATAAGGAG
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