mRNA_Ecto-sp13_S_contig17293.5153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17293.5153.1
Unique NamemRNA_Ecto-sp13_S_contig17293.5153.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17293.5153.1 vs. uniprot
Match: D7G528_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G528_ECTSI)

HSP 1 Score: 448 bits (1153), Expect = 1.760e-153
Identity = 340/401 (84.79%), Postives = 347/401 (86.53%), Query Frame = 1 
Query:    1 MKKKHKDEEKNDEKKTGEGAMDDDGRDDLEDNSDKQNLIMAIKLMESAHEQRYHRAVISKEDQAAATDTRLGAAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQRPGKSRRGAGGRVAALTGGKIRGKSGAIWDDWEQAVFFKDHPSDESEDDEETRASEQQARKVQAEDAQAQALSNGDVPKQKKTAKTGSARVRTFRTDPADG--ATELMSLMCKRLQRQDDSGGGXXXXXXGQNAGLDARVLSLETSSAKIVDLLGKTSSRMEHPQQATSPWTPGGYPVNWAPGGGWQAPAPXXPYGPTAGAAPWVQAGPAPTSXXXXXXXXXXXXXXXXXXXXXXXPLPGYHVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAPWPAH 1197
            MKK HKDEEKND KKTGEGAMDDD RDDLEDNSDKQNLIMAIKLMESAHEQR HRA ISKEDQ+AAT+TRLGAAGM    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     RAQRPGKS RGAGGRVAA  GGKIRGKSGAI+D+WE+AVFF DHPSDES DDEE RAS+QQARKVQA+DAQAQALSNGDVPKQKKTAK GSARVRTFRTDPADG  ATELMSLMCKRLQRQDDSGGGXXXXXXGQNAGLDARVLSLETSSAKIVDLLGK SSRMEH  QATSPW  GGYPVNWA GGGWQA AP  PYGPTAGAAPWVQAG     XXXXXXXXXXXXXXXXXXXXXXXPLPGYHVGAA  XXXXXXXXXXXX               TPAPWPAH
Sbjct:    1 MKKNHKDEEKNDAKKTGEGAMDDDQRDDLEDNSDKQNLIMAIKLMESAHEQRCHRASISKEDQSAATNTRLGAAGMPTQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGS-RAQRPGKSSRGAGGRVAAANGGKIRGKSGAIYDNWEEAVFFNDHPSDESGDDEEARASKQQARKVQADDAQAQALSNGDVPKQKKTAKAGSARVRTFRTDPADGDGATELMSLMCKRLQRQDDSGGGXXXXXXGQNAGLDARVLSLETSSAKIVDLLGKISSRMEHSPQATSPWGAGGYPVNWALGGGWQASAPGGPYGPTAGAAPWVQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPGYHVGAAGVXXXXXXXXXXXX---------------TPAPWPAH 385
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17293.5153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G528_ECTSI1.760e-15384.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17293contigEcto-sp13_S_contig17293:1044..2657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1221
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008260.1
Cds size1221
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462903.3129542-CDS-Ecto-sp13_S_contig17293:1043..21621681462903.3129542-CDS-Ecto-sp13_S_contig17293:1043..2162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17293 1044..2162 -
1681462903.3240805-CDS-Ecto-sp13_S_contig17293:2555..26571681462903.3240805-CDS-Ecto-sp13_S_contig17293:2555..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17293 2556..2657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17293.5153.1prot_Ecto-sp13_S_contig17293.5153.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17293 1044..2657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17293.5153.1

>prot_Ecto-sp13_S_contig17293.5153.1 ID=prot_Ecto-sp13_S_contig17293.5153.1|Name=mRNA_Ecto-sp13_S_contig17293.5153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MKKKHKDEEKNDEKKTGEGAMDDDGRDDLEDNSDKQNLIMAIKLMESAHE
QRYHRAVISKEDQAAATDTRLGAAGMSTQSGAGALSSSRGAGRGDGNSSS
SRGSGGSGSRKGGGFRAQRPGKSRRGAGGRVAALTGGKIRGKSGAIWDDW
EQAVFFKDHPSDESEDDEETRASEQQARKVQAEDAQAQALSNGDVPKQKK
TAKTGSARVRTFRTDPADGATELMSLMCKRLQRQDDSGGGSGSGSGGQNA
GLDARVLSLETSSAKIVDLLGKTSSRMEHPQQATSPWTPGGYPVNWAPGG
GWQAPAPGGPYGPTAGAAPWVQAGPAPTSWPANAPGGAQGAPPGGQQGAP
AGPLPGYHVGAAGAAGAAGAAGAAGAVGAVGAAGAAGAVGATPAPWPAHA
TWGTQGA
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mRNA from alignment at Ecto-sp13_S_contig17293:1044..2657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17293.5153.1 ID=mRNA_Ecto-sp13_S_contig17293.5153.1|Name=mRNA_Ecto-sp13_S_contig17293.5153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1614bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17293:1044..2657- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAAGAAGCACAAGGACGAGGAGAAGAACGACGAGAAGAAAACAGG
GGAGGGGGCCATGGACGATGACGGGAGAGATGACTTGGAGGACAACTCCG
ACGTAAGTCCTCTTGGCGTCGAGTCTTTGCGATTACTATTTAGTCTATTC
GGTTCGGGTTTCAACAGGCCGGCCACTATAGACGGATCGAGCTACCGTAG
GTCGTGCGTACCCTGCATGTTGATGACTTACAAATTTACATGCAGATACT
AGAGGTCACGCAGCAACAACGATTCATGACTTGCCACAGGGGGGTGCTGT
CCTGGCCGTATTTGATTTTTCAGGCAAAACCACGTAAACTCGGTGCATCC
AACGCTGTCTTTGTCAATCTGCTGTAGTGATGACGAACGTTGTAGTCGGT
AGCATGGTAGCATCTTACCCACGCGCTTCCACAAGTTGATTGTATCCCGA
TCGTGTCTTTCCTTGGTTCTTTGTTTCCTTGCCTTCTCACGACAGAAACA
AAATCTGATAATGGCCATCAAACTGATGGAGTCAGCCCACGAGCAAAGGT
ACCACCGAGCTGTTATCTCCAAAGAGGACCAAGCGGCGGCCACCGACACT
CGTCTAGGCGCCGCAGGTATGTCGACGCAGAGTGGCGCCGGGGCTCTCAG
CTCTTCGAGAGGTGCGGGCCGTGGTGACGGGAACAGCAGCAGCAGTCGCG
GTTCAGGCGGGAGCGGAAGTCGCAAGGGTGGCGGTTTCCGCGCCCAGCGG
CCCGGGAAGTCGAGGCGAGGTGCTGGAGGACGTGTAGCGGCTCTAACTGG
TGGGAAAATCAGAGGGAAAAGCGGCGCGATTTGGGACGACTGGGAACAGG
CCGTGTTCTTCAAGGACCATCCCTCCGACGAGTCAGAGGACGACGAAGAG
ACGAGAGCTTCGGAACAACAGGCCAGGAAGGTTCAGGCGGAAGACGCACA
AGCCCAGGCGCTCTCCAATGGCGACGTGCCCAAGCAAAAGAAGACCGCGA
AGACCGGCAGCGCGCGTGTGCGAACTTTCCGGACTGACCCCGCGGACGGT
GCGACTGAACTGATGAGCCTCATGTGCAAGAGGCTCCAGAGGCAAGATGA
CAGTGGGGGTGGGAGCGGCAGCGGCAGCGGCGGCCAGAACGCCGGTCTGG
ATGCTCGCGTGCTTTCGTTAGAGACTTCGAGCGCGAAGATCGTCGACCTT
CTGGGCAAGACTTCCAGTCGGATGGAACATCCACAACAGGCCACATCGCC
GTGGACTCCCGGTGGGTACCCTGTGAATTGGGCACCGGGAGGGGGCTGGC
AAGCACCCGCTCCCGGAGGGCCGTACGGACCCACGGCTGGTGCTGCTCCT
TGGGTCCAAGCCGGACCAGCGCCGACTTCCTGGCCTGCGAACGCTCCGGG
AGGGGCCCAAGGGGCGCCGCCGGGAGGACAGCAAGGAGCGCCGGCTGGAC
CACTTCCAGGTTACCACGTGGGGGCGGCGGGGGCGGCGGGGGCGGCGGGG
GCGGCGGGAGCGGCGGGGGCGGTGGGGGCGGTGGGGGCGGCGGGGGCGGC
GGGGGCGGTGGGGGCAACGCCGGCTCCCTGGCCTGCGCACGCAACGTGGG
GGACGCAAGGGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17293:1044..2657-

>mRNA_Ecto-sp13_S_contig17293.5153.1 ID=mRNA_Ecto-sp13_S_contig17293.5153.1|Name=mRNA_Ecto-sp13_S_contig17293.5153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17293:1044..2657- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAAGAAGCACAAGGACGAGGAGAAGAACGACGAGAAGAAAACAGG
GGAGGGGGCCATGGACGATGACGGGAGAGATGACTTGGAGGACAACTCCG
ACAAACAAAATCTGATAATGGCCATCAAACTGATGGAGTCAGCCCACGAG
CAAAGGTACCACCGAGCTGTTATCTCCAAAGAGGACCAAGCGGCGGCCAC
CGACACTCGTCTAGGCGCCGCAGGTATGTCGACGCAGAGTGGCGCCGGGG
CTCTCAGCTCTTCGAGAGGTGCGGGCCGTGGTGACGGGAACAGCAGCAGC
AGTCGCGGTTCAGGCGGGAGCGGAAGTCGCAAGGGTGGCGGTTTCCGCGC
CCAGCGGCCCGGGAAGTCGAGGCGAGGTGCTGGAGGACGTGTAGCGGCTC
TAACTGGTGGGAAAATCAGAGGGAAAAGCGGCGCGATTTGGGACGACTGG
GAACAGGCCGTGTTCTTCAAGGACCATCCCTCCGACGAGTCAGAGGACGA
CGAAGAGACGAGAGCTTCGGAACAACAGGCCAGGAAGGTTCAGGCGGAAG
ACGCACAAGCCCAGGCGCTCTCCAATGGCGACGTGCCCAAGCAAAAGAAG
ACCGCGAAGACCGGCAGCGCGCGTGTGCGAACTTTCCGGACTGACCCCGC
GGACGGTGCGACTGAACTGATGAGCCTCATGTGCAAGAGGCTCCAGAGGC
AAGATGACAGTGGGGGTGGGAGCGGCAGCGGCAGCGGCGGCCAGAACGCC
GGTCTGGATGCTCGCGTGCTTTCGTTAGAGACTTCGAGCGCGAAGATCGT
CGACCTTCTGGGCAAGACTTCCAGTCGGATGGAACATCCACAACAGGCCA
CATCGCCGTGGACTCCCGGTGGGTACCCTGTGAATTGGGCACCGGGAGGG
GGCTGGCAAGCACCCGCTCCCGGAGGGCCGTACGGACCCACGGCTGGTGC
TGCTCCTTGGGTCCAAGCCGGACCAGCGCCGACTTCCTGGCCTGCGAACG
CTCCGGGAGGGGCCCAAGGGGCGCCGCCGGGAGGACAGCAAGGAGCGCCG
GCTGGACCACTTCCAGGTTACCACGTGGGGGCGGCGGGGGCGGCGGGGGC
GGCGGGGGCGGCGGGAGCGGCGGGGGCGGTGGGGGCGGTGGGGGCGGCGG
GGGCGGCGGGGGCGGTGGGGGCAACGCCGGCTCCCTGGCCTGCGCACGCA
ACGTGGGGGACGCAAGGGGCG
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