prot_Ecto-sp13_S_contig17279.5146.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17279.5146.1
Unique Nameprot_Ecto-sp13_S_contig17279.5146.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length114
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17279.5146.1 vs. uniprot
Match: D7G3Q2_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Q2_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.590e-59
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0 
Query:    1 MLGRGGGGRVASEDGHADSPVGIELRGIKDRQGSSSRNGGFSLIASSDDDVEQLVGAGGDVVNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 105
            MLGRGGGGRV SEDGHADSPVGIEL+GI+DRQGSSSRNGGFSL+ASSDDDVEQLVGAGGD VNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ
Sbjct:    1 MLGRGGGGRVESEDGHADSPVGIELKGIEDRQGSSSRNGGFSLVASSDDDVEQLVGAGGDAVNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 105
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BLAST of mRNA_Ecto-sp13_S_contig17279.5146.1 vs. uniprot
Match: A0A8K1CFQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFQ4_PYTOL)

HSP 1 Score: 53.5 bits (127), Expect = 7.100e-6
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0 
Query:   72 DPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 105
            D R HL+SD RTF N +I+F+G+GVLG+P+AFRQ
Sbjct:  286 DERQHLASDTRTFANTIIAFLGSGVLGLPYAFRQ 319
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BLAST of mRNA_Ecto-sp13_S_contig17279.5146.1 vs. uniprot
Match: H6S441_PLAVT (Aminoacid transporter (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S441_PLAVT)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-5
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 0 
Query:   75 LHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 105
            LHLSSD +TF+N  I+F+G+GVLG+P+AFRQ
Sbjct:   66 LHLSSDLKTFINTCIAFLGSGVLGLPYAFRQ 96
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BLAST of mRNA_Ecto-sp13_S_contig17279.5146.1 vs. uniprot
Match: A0A5D6YTP0_9STRA (Aa_trans domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YTP0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.900e-5
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0 
Query:   70 GDDPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 105
            GD    HL+SD RTF + +ISF+GAGVLG PFAF+Q
Sbjct:   33 GDVAPHHLASDARTFASAIISFLGAGVLGFPFAFKQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17279.5146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3Q2_ECTSI1.590e-5995.24Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A8K1CFQ4_PYTOL7.100e-664.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H6S441_PLAVT1.900e-567.74Aminoacid transporter (Fragment) n=1 Tax=Plasmopar... [more]
A0A5D6YTP0_9STRA5.900e-563.89Aa_trans domain-containing protein n=1 Tax=Pythium... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..113
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..103
NoneNo IPR availableTMHMMTMhelixcoord: 84..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17279contigEcto-sp13_S_contig17279:538..1772 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17279.5146.1mRNA_Ecto-sp13_S_contig17279.5146.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17279 262..3654 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17279.5146.1 ID=prot_Ecto-sp13_S_contig17279.5146.1|Name=mRNA_Ecto-sp13_S_contig17279.5146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MLGRGGGGRVASEDGHADSPVGIELRGIKDRQGSSSRNGGFSLIASSDDD
VEQLVGAGGDVVNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIP
FAFRQVCVPRPYR*
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