mRNA_Ecto-sp13_S_contig17279.5146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17279.5146.1
Unique NamemRNA_Ecto-sp13_S_contig17279.5146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17279.5146.1 vs. uniprot
Match: D7G3Q2_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Q2_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 8.930e-58
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:   97 MLGRGGGGRVASEDGHADSPVGIELRGIKDRQGSSSRNGGFSLIASSDDDVEQLVGAGGDVVNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 411
            MLGRGGGGRV SEDGHADSPVGIEL+GI+DRQGSSSRNGGFSL+ASSDDDVEQLVGAGGD VNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ
Sbjct:    1 MLGRGGGGRVESEDGHADSPVGIELKGIEDRQGSSSRNGGFSLVASSDDDVEQLVGAGGDAVNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17279.5146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Q2_ECTSI8.930e-5895.24Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17279contigEcto-sp13_S_contig17279:262..3654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score200.7
Seed ortholog evalue3.7e-49
Seed eggNOG ortholog2880.D7G3Q2
Model size714
KEGG koko:K10569,ko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko03410,ko04138,map03410,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0009605,GO:0009607,GO:0009624,GO:0012505,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015318,GO:0015711,GO:0015801,GO:0015804,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0034220,GO:0042175,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071705,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1903825,GO:1905039
Exons3
EggNOG free text desc.amino acid transmembrane transporter activity
EggNOG OGsCOG0814@1,KOG1304@2759
Cds size342
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03400,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.7632067-UTR-Ecto-sp13_S_contig17279:261..5371681462902.7632067-UTR-Ecto-sp13_S_contig17279:261..537Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17279 262..537 -
1681462902.7970908-UTR-Ecto-sp13_S_contig17279:1772..17921681462902.7970908-UTR-Ecto-sp13_S_contig17279:1772..1792Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17279 1773..1792 -
1681462902.805041-UTR-Ecto-sp13_S_contig17279:3578..36541681462902.805041-UTR-Ecto-sp13_S_contig17279:3578..3654Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17279 3579..3654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.7802157-CDS-Ecto-sp13_S_contig17279:537..7911681462902.7802157-CDS-Ecto-sp13_S_contig17279:537..791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17279 538..791 -
1681462902.788725-CDS-Ecto-sp13_S_contig17279:1684..17721681462902.788725-CDS-Ecto-sp13_S_contig17279:1684..1772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17279 1685..1772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17279.5146.1prot_Ecto-sp13_S_contig17279.5146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17279 538..1772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17279.5146.1

>prot_Ecto-sp13_S_contig17279.5146.1 ID=prot_Ecto-sp13_S_contig17279.5146.1|Name=mRNA_Ecto-sp13_S_contig17279.5146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MLGRGGGGRVASEDGHADSPVGIELRGIKDRQGSSSRNGGFSLIASSDDD
VEQLVGAGGDVVNGGKRAGGDDPRLHLSSDRRTFVNLLISFVGAGVLGIP
FAFRQVCVPRPYR*
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mRNA from alignment at Ecto-sp13_S_contig17279:262..3654-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17279.5146.1 ID=mRNA_Ecto-sp13_S_contig17279.5146.1|Name=mRNA_Ecto-sp13_S_contig17279.5146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17279:262..3654- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATAGCCTGTTACTCCGGTTCTTGGCTTCGAAGAGAGGGGCCGACGCT
CGAGAACAGTGTCGTCCTGTGTCCAGGTACAGAACCACAAGCCTGTTTGT
TCCGCAAGTCACAGAACGAGTCCGTCGTCGACGCAAGGCGTTTAGTTTTG
GTGGATAGCTGCTGGCGCCGGTGCCTCTGTCGTTGTGTGCACACGCATCG
AGAGCAATTGATGGATTTTATGTGGCAGTCGCCTCGCATCGTTACGGCTT
ACTAGAGATTTGGCAACAACAGCAGTACAACAACGAAAAATCAAATTGTT
TTTTATCAGCAGCAGCGGCAGCAAGAGAGCCGGTCGAGCTGGGAGATTTG
CCGGGAGATGCACCACCAGCACCGCGACCAGTAGCATTACTGACAAGCAC
GAAGCTAGAAATACCTTTACAGCGGCAGCACCGCAGTCTTCACAACAGCA
GTCAATACGCGTTTTGCCAGTCGCTGAAAAATGGACAGAATCATTTGCTG
CTTGCCAGCGGAAATTTCTCGGCCCCCATGGGCGGATGGCATTATAGGTG
AGTAGCGATGGAGGTGACGATCACATGGCCCCGGGCATTAAGCCAACAGA
GCTCTCTCAACGACAGTGAAAGTGTCGCGATGGAGGGTTGAGAAAAAAGG
CATGTCCACGACTACCGCCTGGCACTAAACAGAGCATGCCAAGAAGGCGG
GGGAAAAGTAACGGTTGGCTATCAGAAGGGTGTGTTGAGTTGTTCCCGGC
TCCTTGTCCGCGCACCCGTGTACTACACAAGATAACACACCCCTCGGCGA
CATGTAACATTTTGGCTTTCATATGGAGTATATCACCACTATCACCTAGT
GTTGTATCCCCTGGGGGCGTATGATATCTTGCGTAGCCCGGGTGATAAAG
TAAAGGTCGCGTGGGCTATGAGGGGGTGTGTGGGACTGCCGAACACACTT
TGCAGGGAAAGTAGGTCTGAGAAAACGGGACAAGGGGTGTCATCACTGCC
CGCAGCATAGAATTACCTACCGTGCCTGTTGTCACACGTGCAGCCGGATT
GGTATTGACGGGGTGTAATACCCCTACCTGCATGACACTACCGTACGTAC
TGCTGCCGCATTTGCAAGGTGTGTGGTACTGAGAGGGGGTGGTGCCACTG
ACGCACGACAGCGTAGTACCTGCCGAGCATGCCTTGCAGTCTTGTGGAAA
CGATAGTGTATGGGGGGGTATAGCAGGTGAAAATCACATGACCCTGGGCA
ACGAACGCCAACAGAGCTCTGTGGACGACAGCGAAAGTGTTGCCGTGGAG
TATTGAAGAAGAAAGGCATGTGCACGGCTACCGACTGGCACGAAACAGAG
CATGCCAAGAAGGCGGAGGGAGAATAAACGTTAGCTTTCAGAAGGGTGTG
TTTTGTATGTTCCCTGCTGGGCCATCTTGTGCGTCATCAGGGACCACTGT
CGAGTCATCACCGAGGTGACAGTGGCATGGGCTCCGTGATCACATGCGCC
ATAACCTCAGGGGGGGTGATATCTCATGCCACCCTCGGAGATAATATTTC
GGCTCCTCGTTTGAGGCCCGGAAGTATTCAGGCACCGGGTTATGTGTTCT
GTGGGGGGTGTATTGTCTTACGTGGGGTGTGTTATCCTGTGTCGTATACG
GTATTCACCCGCGATGCCATTAGCGCTATAACATTGCCTCAGCGAAAGTT
ATCGCGCGAGCCTCCTACAGGCAACAGTAAGGACCGCTTTGCTACTGTGC
TCGTTGGCAGCGCAGAACAGCTAGCAATCCGTTGCGTCAAAATATACCAC
ATTGTTTGTCCAGCTGCCGTTTTTTTACCCCGTGCTCTCGACCGCACGAC
GCACATCCGCAGGCAACGCCGACGAGGCTGTGATGCTCGGCAGAGGCGGC
GGCGGGCGGGTAGCGAGCGAGGATGGCCACGCCGACAGCCCAGTCGGCAT
CGAGCTCAGAGGGATAAAAGGTGTGATGATCGACGTCCTGGGGGTTTGGG
CTGGTCGAGAATTCAGGGAGAAATTACGCTACTACCCCTGTCTCTCCTGT
GTCATACTTTCTCTGTTTCTTTATCTGTCCGTGTTCGCCTGTCTATGGTT
GGCCTGCTCTCCTAGTTGGTGCTTGCTCGTGGACAGCCTCGTACGATTGC
GCCGAGGTTAGTACAATGCGACGACTTCATTCGGAAAGGTTTTGGACTCT
CACCACGAGATGGTTGGTATCTGCTGGTCAGCGAGAGCTGCATCCAATTG
CGACTAGACCAGGAGGGGAAGTGATACTTCTGCCTTATCTGGTGGACGGG
TAAACCTCGCCCTTTGCCAGAACTCGCAGTAACGCATAATGGCGAATCTC
GCTCCTCGCTTTGTGCTGAAACCTCGTTGCTGACAGCCTGGCAGGCGGCG
AACAAACCTTCCTGTTTTAGGTGCAAAAGCGATCACACACGACCTACACT
AGAATCGATTTGCCGAAGCCCGTTTGCTCCTCACCCGCTAGGTTGCGAAA
GCCCGCATCAATGCGTGCAAGGAATTATCACGATAGGGGTATGATCGTAC
AAAGGCGCACCCTTTTCGATGTTAGCACACCTCTGGACCAATCAAGCCAC
GATACTTGGTCGAGGGTGTGTGTGAGATGCCTCGCACTGTTGCATATTGT
ACCAAGTTGTTACTCGTCTCCGTTCTTCGTTCGCACTTACAGCCGCAGTA
TAGTTGTCTCACACCGCAACAGTATACGGTCAAGCATGGAACTGAAAACA
TCATATCCCAGGCCTTCCCAGTAACAGTCTCCCTCCCGTCCCTTTTTTGC
CGCTGGTTGTTCTTTTGTGCCCCCCCCCCCTTTTTTTTTTCCTCTCTCTT
TCGACGGAAAAAGATCGACAAGGGAGTTCCTCCAGAAATGGAGGCTTTTC
CTTGATTGCCAGCAGCGACGACGACGTGGAGCAGTTGGTTGGGGCGGGGG
GCGACGTTGTTAACGGCGGCAAGCGGGCGGGGGGGGACGACCCGCGGCTG
CACCTTAGCTCCGACAGGAGGACGTTCGTTAACCTACTCATTTCTTTCGT
TGGGGCCGGGGTTCTCGGCATCCCGTTCGCTTTCAGACAGGTGTGCGTGC
CTCGGCCGTACCGATGACTAGCCCACGAATCTTCCTGTACTACACGTTCA
TGTTCGGGAGTTGCCAGCATCCCCACATTCGTATACGAGAATTTTTCGGC
TTTCGGACAGCGGTGGTGCCGCCGCCGCACAATGGCTCTTAACTGTAGTG
CACGAATCGTTGTGTACTGCACGTTCGGAAACGAGAGTTGTCAGTACCCC
CCGTGTTCATATACGGGAGTTGTAGGCTTCCACACAAGGGTGGTGCGTCT
GCTGTGCCGTAGCTCGTGTGGCACACGAATTATCGTGTACCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17279:262..3654-

>mRNA_Ecto-sp13_S_contig17279.5146.1 ID=mRNA_Ecto-sp13_S_contig17279.5146.1|Name=mRNA_Ecto-sp13_S_contig17279.5146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17279:262..3654- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGGCAGAGGCGGCGGCGGGCGGGTAGCGAGCGAGGATGGCCACGC
CGACAGCCCAGTCGGCATCGAGCTCAGAGGGATAAAAGATCGACAAGGGA
GTTCCTCCAGAAATGGAGGCTTTTCCTTGATTGCCAGCAGCGACGACGAC
GTGGAGCAGTTGGTTGGGGCGGGGGGCGACGTTGTTAACGGCGGCAAGCG
GGCGGGGGGGGACGACCCGCGGCTGCACCTTAGCTCCGACAGGAGGACGT
TCGTTAACCTACTCATTTCTTTCGTTGGGGCCGGGGTTCTCGGCATCCCG
TTCGCTTTCAGACAGGTGTGCGTGCCTCGGCCGTACCGATGA
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