mRNA_Ecto-sp13_S_contig17271.5141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17271.5141.1
Unique NamemRNA_Ecto-sp13_S_contig17271.5141.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: D7FYT3_ECTSI (Dynein heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT3_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.440e-53
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAI NGQTLIIENIGEEIDPTLDPVLARAI
Sbjct: 3326 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAITNGQTLIIENIGEEIDPTLDPVLARAI 3418
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: A0A662XXR3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXR3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.740e-41
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENG++IT+CKRWPL+IDPQ QGIKWLR++E+D GL V+QLSQ +WLR  ETAI+NG  LIIENIGEEID TLDPVL RA+
Sbjct:  182 MMSEGLPADRISIENGAIITSCKRWPLVIDPQLQGIKWLREKEKDRGLVVLQLSQNQWLRKTETAIVNGHVLIIENIGEEIDATLDPVLGRAV 274
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: A0A6A4BFZ5_9STRA (Dynein beta chain, flagellar outer arm (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BFZ5_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.540e-41
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENG++IT+CKRWPL+IDPQ QGIKWLR++E+D GL V+QLSQ +WLR  ETAI+NG  LIIENIGEEID TLDPVL RA+
Sbjct:  113 MMSEGLPADRISIENGAIITSCKRWPLVIDPQLQGIKWLREKEKDRGLVVLQLSQNQWLRKTETAIVNGHVLIIENIGEEIDATLDPVLGRAV 205
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: A0A6A3HS19_9STRA (Dynein beta chain, ciliary (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HS19_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.620e-41
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENG++IT+CKRWPL+IDPQ QGIKWLR++E+D GL V+QLSQ +WLR  ETAI+NG  LIIENIGEEID TLDPVL RA+
Sbjct:  436 MMSEGLPADRISIENGAIITSCKRWPLVIDPQLQGIKWLREKEKDRGLVVLQLSQNQWLRKTETAIVNGHVLIIENIGEEIDATLDPVLGRAV 528
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: A0A329S004_9STRA (Dynein beta chain, flagellar outer arm n=23 Tax=Peronosporaceae TaxID=4777 RepID=A0A329S004_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.250e-41
Identity = 69/93 (74.19%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENG++IT+CKRWPL+IDPQ QGIKWLR++E++ GL V+QLSQ +WLR  ETAI+NG  LIIENIGEEID TLDPVL RA+
Sbjct: 3476 MMSEGLPADRISIENGAIITSCKRWPLVIDPQLQGIKWLREKEKERGLVVLQLSQNQWLRKTETAIVNGHVLIIENIGEEIDATLDPVLGRAV 3568
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: A0A835YNN0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.350e-40
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNG--LSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENGS+IT+CKRWPLIIDPQ QGIKWLR+REE  G  L+V+QL+Q+ WLR VE+AI NG TLIIENIGE+ID TL+PVLARAI
Sbjct: 3394 MISEGLPADRISIENGSIITSCKRWPLIIDPQAQGIKWLRRREEKAGAGLAVVQLTQRNWLRAVESAITNGSTLIIENIGEDIDATLEPVLARAI 3488
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: K3X373_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X373_GLOUD)

HSP 1 Score: 150 bits (378), Expect = 4.370e-40
Identity = 68/93 (73.12%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENG++ITNCKRWPL+IDPQ QGIKWLR++E+D GL V+QLSQ +WLR +E AI+NG  +IIENI EEID TLDPVL+RA+
Sbjct: 3349 MISEGLPADRISIENGAIITNCKRWPLVIDPQLQGIKWLREKEKDRGLVVMQLSQNQWLRKMEAAIVNGYVIIIENIDEEIDATLDPVLSRAV 3441
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: A0A812TPN4_SYMMI (ODA4 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TPN4_SYMMI)

HSP 1 Score: 149 bits (377), Expect = 5.780e-40
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLP+DRIS+ENGS+ITNCKRWPL+IDPQQQGIKWLR++EE+NGL V QL+QK W R VE AI NG T+I+ENI  +ID T+DPVL+RAI
Sbjct:  419 MISEGLPSDRISIENGSIITNCKRWPLLIDPQQQGIKWLRQKEEENGLQVFQLNQKGWQRKVEQAITNGHTIIVENIQVDIDATMDPVLSRAI 511
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: A0A067CKL6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKL6_SAPPC)

HSP 1 Score: 148 bits (374), Expect = 1.510e-39
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENGS+ITNC RWPLIIDPQ QGIKWLR++E+   L VIQL+Q +WLR +ETAI+NG  +I+ENIGEEID TLDPVLARA+
Sbjct: 3425 MLSEGLPADRISIENGSIITNCTRWPLIIDPQLQGIKWLREKEKARELVVIQLTQNQWLRKMETAIVNGHVVIVENIGEEIDATLDPVLARAV 3517
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BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Match: T0QHV5_SAPDV (Uncharacterized protein n=21 Tax=Saprolegniaceae TaxID=4764 RepID=T0QHV5_SAPDV)

HSP 1 Score: 148 bits (374), Expect = 1.510e-39
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSVIQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI 279
            M SEGLPADRIS+ENGS+ITNC RWPLIIDPQ QGIKWLR++E+   L VIQL+Q +WLR +ETAI+NG  +I+ENIGEEID TLDPVLARA+
Sbjct: 3474 MLSEGLPADRISIENGSIITNCTRWPLIIDPQLQGIKWLREKEKARELVVIQLTQNQWLRKMETAIVNGHVVIVENIGEEIDATLDPVLARAV 3566
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17271.5141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYT3_ECTSI1.440e-5398.92Dynein heavy chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A662XXR3_9STRA1.740e-4175.27Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A6A4BFZ5_9STRA2.540e-4175.27Dynein beta chain, flagellar outer arm (Fragment) ... [more]
A0A6A3HS19_9STRA2.620e-4175.27Dynein beta chain, ciliary (Fragment) n=2 Tax=Phyt... [more]
A0A329S004_9STRA9.250e-4174.19Dynein beta chain, flagellar outer arm n=23 Tax=Pe... [more]
A0A835YNN0_9STRA2.350e-4076.84Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
K3X373_GLOUD4.370e-4073.12Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A812TPN4_SYMMI5.780e-4073.12ODA4 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A067CKL6_SAPPC1.510e-3974.19Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QHV5_SAPDV1.510e-3974.19Uncharacterized protein n=21 Tax=Saprolegniaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17271contigEcto-sp13_S_contig17271:1790..2304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score187.2
Seed ortholog evalue3.5e-45
Seed eggNOG ortholog2880.D7FYT3
Preferred nameODA-DHCB
Model size279
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
Exons2
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size279
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.51758-CDS-Ecto-sp13_S_contig17271:1789..18911681462902.51758-CDS-Ecto-sp13_S_contig17271:1789..1891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17271 1790..1891 +
1681462902.5283499-CDS-Ecto-sp13_S_contig17271:2127..23041681462902.5283499-CDS-Ecto-sp13_S_contig17271:2127..2304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17271 2128..2304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17271.5141.1prot_Ecto-sp13_S_contig17271.5141.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17271 1790..2304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17271.5141.1

>prot_Ecto-sp13_S_contig17271.5141.1 ID=prot_Ecto-sp13_S_contig17271.5141.1|Name=mRNA_Ecto-sp13_S_contig17271.5141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MTSEGLPADRISLENGSVITNCKRWPLIIDPQQQGIKWLRKREEDNGLSV
IQLSQKKWLRDVETAIMNGQTLIIENIGEEIDPTLDPVLARAI
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mRNA from alignment at Ecto-sp13_S_contig17271:1790..2304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17271.5141.1 ID=mRNA_Ecto-sp13_S_contig17271.5141.1|Name=mRNA_Ecto-sp13_S_contig17271.5141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17271:1790..2304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGCGAGGGACTGCCAGCAGATCGAATATCGCTTGAGAACGGTTC
GGTCATCACGAACTGCAAGCGGTGGCCTCTAATCATCGATCCCCAGCAGC
AGGTAACAATCGCATCATCTCCTTGTTGAAAACTTCGATATTTTACCGGA
GCGAAGGTTTGATTACACCTCTGGACTAGATTCAGTGCTTCTTGTGGACT
GGGGAGCACCCAAAAGAAAACACCGCTACCGATTTGCCACAATCGTATGT
CGCTGACTTCCTGCAAACGTTCCTCATCGACATGAAATTTTGAACGCGAC
TAACTCTGCTTGCCCCTTTTTTAATGTCGACCTGTCAGGGGATCAAATGG
CTGCGTAAGAGAGAGGAAGACAACGGCCTCTCGGTGATTCAGCTCTCCCA
GAAGAAGTGGTTACGAGATGTCGAGACTGCCATCATGAACGGGCAGACTC
TGATTATCGAGAACATTGGCGAGGAAATCGACCCCACCCTTGATCCCGTG
CTTGCTCGCGCTATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17271:1790..2304+

>mRNA_Ecto-sp13_S_contig17271.5141.1 ID=mRNA_Ecto-sp13_S_contig17271.5141.1|Name=mRNA_Ecto-sp13_S_contig17271.5141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17271:1790..2304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGCGAGGGACTGCCAGCAGATCGAATATCGCTTGAGAACGGTTC
GGTCATCACGAACTGCAAGCGGTGGCCTCTAATCATCGATCCCCAGCAGC
AGGGGATCAAATGGCTGCGTAAGAGAGAGGAAGACAACGGCCTCTCGGTG
ATTCAGCTCTCCCAGAAGAAGTGGTTACGAGATGTCGAGACTGCCATCAT
GAACGGGCAGACTCTGATTATCGAGAACATTGGCGAGGAAATCGACCCCA
CCCTTGATCCCGTGCTTGCTCGCGCTATC
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