mRNA_Ecto-sp13_S_contig17270.5140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17270.5140.1
Unique NamemRNA_Ecto-sp13_S_contig17270.5140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17270.5140.1 vs. uniprot
Match: A0A6H5KHC9_9PHAE (VRR-NUC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC9_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 2.310e-53
Identity = 103/128 (80.47%), Postives = 107/128 (83.59%), Query Frame = 2 
Query:  737 LSAGGSIATPLPPPTVTDRWGGKQALQHYPHPSDAAATAAVGVQRCEWRQSTQQVQGERQQQSQEFPPAVLT---LQLKEWGETQQQQPLQEASXXXXXXXWGRGASAATHSLGGGCLRDDQQAGHDQ 1111
            +  G SIATPLPPPT TD  GGK ALQHYPHPSDAAATA VGVQRCEW Q+TQQVQGERQQQSQEFPPAVL    LQL+EWGETQQQQPLQEAS       WGR ASAATHSLGGGCLRDDQ+AGHDQ
Sbjct:    1 MELGDSIATPLPPPTATDGRGGKPALQHYPHPSDAAATAGVGVQRCEWGQTTQQVQGERQQQSQEFPPAVLAVLALQLQEWGETQQQQPLQEASPTLRRRQWGRCASAATHSLGGGCLRDDQEAGHDQ 128
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BLAST of mRNA_Ecto-sp13_S_contig17270.5140.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 6.880e-49
Identity = 95/125 (76.00%), Postives = 100/125 (80.00%), Query Frame = 2 
Query:  737 LSAGGSIATPLPPPTVTDRWGGKQALQHYPHPSDAAATAAVGVQRCEWRQSTQQVQGERQQQSQEFPPAVLTLQLKEWGETQQQQPLQEASXXXXXXXWGRGASAATHSLGGGCLRDDQQAGHDQ 1111
            +  GGSIATPLPPPTV D WGGK ALQHYPHPSDAAATA VGVQRCEW Q+TQQV+ ERQQQ QEFPPAVL LQL+E       QP QEAS       WGRGASAATHSLGGGCLRDDQ+AGHDQ
Sbjct:    1 MELGGSIATPLPPPTVADGWGGKPALQHYPHPSDAAATAGVGVQRCEWGQTTQQVRRERQQQPQEFPPAVLALQLQEXXXXXXXQPRQEASPTLRRQQWGRGASAATHSLGGGCLRDDQEAGHDQ 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17270.5140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHC9_9PHAE2.310e-5380.47VRR-NUC domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0C5_ECTSI6.880e-4976.00Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17270contigEcto-sp13_S_contig17270:749..3198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1113
Hectar predicted targeting categoryother localisation
Exons4
Cds size576
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17270.5140.1prot_Ecto-sp13_S_contig17270.5140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17270 1424..2843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.4366221-UTR-Ecto-sp13_S_contig17270:748..9061681462902.4366221-UTR-Ecto-sp13_S_contig17270:748..906Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17270 749..906 +
1681462902.4530745-UTR-Ecto-sp13_S_contig17270:1399..14231681462902.4530745-UTR-Ecto-sp13_S_contig17270:1399..1423Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17270 1400..1423 +
1681462902.4869733-UTR-Ecto-sp13_S_contig17270:2843..31981681462902.4869733-UTR-Ecto-sp13_S_contig17270:2843..3198Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17270 2844..3198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.4615097-CDS-Ecto-sp13_S_contig17270:1423..16711681462902.4615097-CDS-Ecto-sp13_S_contig17270:1423..1671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17270 1424..1671 +
1681462902.4695024-CDS-Ecto-sp13_S_contig17270:2277..25621681462902.4695024-CDS-Ecto-sp13_S_contig17270:2277..2562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17270 2278..2562 +
1681462902.4778397-CDS-Ecto-sp13_S_contig17270:2800..28431681462902.4778397-CDS-Ecto-sp13_S_contig17270:2800..2843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17270 2801..2843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17270.5140.1

>prot_Ecto-sp13_S_contig17270.5140.1 ID=prot_Ecto-sp13_S_contig17270.5140.1|Name=mRNA_Ecto-sp13_S_contig17270.5140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MLMARPTHEDVSEELGRSPQAQARRDREREESNDRRSQDVFRGLSYLKAQ
VELEFARKASKELARRETAAEEINEEHAQTKKRGASQPSPAATAGVAEED
NEDLPRGDCEAEVRPSNGGQPCGEPSAGQADAQGGRRAAKFKKNGKGRCN
GGGVIDLSDEVVEPPEGLLPMELGEHLRHTPLIRRCRQGVQ*
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mRNA from alignment at Ecto-sp13_S_contig17270:749..3198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17270.5140.1 ID=mRNA_Ecto-sp13_S_contig17270.5140.1|Name=mRNA_Ecto-sp13_S_contig17270.5140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17270:749..3198+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCCCTCCGCACTGATGTCCCGTCTCCGGACCCCCCGGTTCGAAAGCC
GTTCTAAATCAAATTGCAAGTAGTGCTGAGTGCCGATCGTCCCGCCAGAC
CCTGCCCGTGTGCGAGAAAAGCGAAGTCGTGGAGCGGGCGAGGAGAGCAA
GATATGTAGTGAGTGTATTCTCGACATGAAAAGTTGCTTGGCGCCTTCGT
GCTTTCTGATGCGTCCACGATCTATCGAATAGCATGTACAGAAGTAGTCG
TGTACAGGTACACATTTGGAATCCTCGTGTCGTGTACCATCATCAAAGAG
TAGCTTGCGAATTCGTAAAGGGAGCACGTGCCAACGGCGAGGTAGATTAT
ATTGGGTTCAAGAAGTGGTGTGTGCACAGCAGTAATCGGACGTATCCTCG
GTTGTGTGGGACTCGTGTACGAGCGGTGTTTTCACAGTGAAATCGCGGAA
TGGCTGACCGCAGCCACTGTGACCACTGACAGAGTTGTGCATGCGGCGGG
AGCGGCGCGTTTCTCACTCATGAGGCCAACTATTTATTCCCGTTTACACT
AAACTCCCTAGCCGTTTGGTTGGACCTCGACCCTGGCACAACCATCACAG
GACATTTCCTGATCGATGTCTGTGTTTCGAAACTACGATGAACTCGCAAA
GGCGTGGTCGGTGCAAAAGATAAAGATGCTCATGGCAAGGCCAACACATG
AGGACGTCAGCGAGGAGCTTGGAAGGAGTCCACAAGCCCAAGCTAGAAGA
GATCGGGAGCGAGAAGAAAGCAACGACCGACGCTCGCAGGACGTGTTTCG
AGGGCTTTCCTACCTGAAAGCACAGGTTGAGCTTGAGTTTGCCCGGAAAG
CCTCCAAGGAGCTTGCGCGACGTGAGACCGCTGCGGAGGAAATCAACGAG
GAGCATGCCCAAACGAAGAAGAGGTGTGCTGGGGGATCTTTGTGGTGTTC
GAGTTGTGAGGGAATGTGGTTATGCATGAATATGTAAGACTCGGCGTTTT
CGCCTATTTCTGCCGTTGGTGCCGTGTTTCTGTGACAATTGGGCATGTCG
CCACTGCTGCTGGTGGTCTGCTGCTGCTGTGTGGTGGTGTTGGTGTTGCT
TGGTTCCTGAGGGTGCAAAACCTACACCTTCACAGGTCTAGCCACTCGTG
CTCAACATGCTTCGGTCCGTCTTACACATGGCACATTTCCTAATGTAGCA
CGACGACAAATGTGTCGCAGCTCCGTTCGGAGATGTTGGAGCTAGATAGA
TGCGTGTGTCGGAGGGTTACTACAGTAAACCCGCGTGACGTTGATCTTTT
CTGGCGTTGGGCGATGAACTACTCCAAATCTCATCAACAGCGAAGATCCC
GCTTCTCGTTTGCACTGCTGAAGCAAATTCAGCTGAATTCGACGCCTTAA
TCATTGCTGTGCAATCAGTGTTGTGTGGATCGGTCATACTTGGAACGGCT
GGGCCTGCATGCGGGTTCTCTGGCGTTGCTTGTAGCTATGGACTTCCAAA
AGTGTCTCCCGCATCATGCCATCCTACAGAGGAGCCTCCCAGCCATCACC
AGCAGCTACGGCAGGGGTAGCAGAAGAAGACAATGAGGACCTCCCACGTG
GTGACTGCGAGGCAGAAGTACGGCCATCGAACGGCGGCCAGCCATGCGGA
GAACCATCCGCCGGGCAGGCAGACGCACAAGGGGGGCGACGGGCAGCAAA
GTTCAAGAAGAACGGGAAAGGTCGATGCAACGGTGGCGGGGTGATCGACC
TGTCCGACGAGGTGGTCGAGCCACCGGAGGGACTGCTGCCGATGGAGCTG
GGTGAGCACCTCAGTGGTTGTTCTTGGCGGTGTGGGCAGCGTTTTCCGTG
TTACGCTGTGGTAGTTTTGTACCCTACGTTGAGGAGAAGTACTACTTTAA
ATCCCCACGAGATCCTAGTGCTGTGTGATTTTGTGACAAGATACTCATGT
GTTTTGGGCAGGAAATCAAATGGTGTCGCCTAACCAGCCACGGAGTTTGC
TACAAGCCTGTTTTCAGGGTCCGGCCTCGATTTTCTGTCCGCCCTCTCGT
GCGCACACCCCTCTCATTCGCCGTTGTCGGCAGGGGGTTCAATAGCCACG
CCGCTACCACCGCCGACTGTCACGGACAGGTGGGGGGGCAAGCAGGCCCT
CCAGCACTACCCACACCCTTCTGATGCAGCTGCGACCGCTGCTGTGGGAG
TCCAGAGGTGCGAGTGGCGTCAGTCGACGCAGCAGGTTCAGGGAGAGCGT
CAGCAGCAGTCACAAGAGTTCCCTCCGGCTGTGCTAACCCTGCAGCTGAA
AGAGTGGGGCGAAACACAGCAGCAGCAGCCGCTGCAGGAAGCATCCTCAA
CCCTCAGGCGCCAACAGTGGGGGCGGGGTGCCAGCGCGGCCACACACTCG
CTGGGCGGAGGTTGCTTGCGTGACGATCAACAAGCAGGACACGACCAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17270:749..3198+

>mRNA_Ecto-sp13_S_contig17270.5140.1 ID=mRNA_Ecto-sp13_S_contig17270.5140.1|Name=mRNA_Ecto-sp13_S_contig17270.5140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17270:749..3198+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCATGGCAAGGCCAACACATGAGGACGTCAGCGAGGAGCTTGGAAG
GAGTCCACAAGCCCAAGCTAGAAGAGATCGGGAGCGAGAAGAAAGCAACG
ACCGACGCTCGCAGGACGTGTTTCGAGGGCTTTCCTACCTGAAAGCACAG
GTTGAGCTTGAGTTTGCCCGGAAAGCCTCCAAGGAGCTTGCGCGACGTGA
GACCGCTGCGGAGGAAATCAACGAGGAGCATGCCCAAACGAAGAAGAGAG
GAGCCTCCCAGCCATCACCAGCAGCTACGGCAGGGGTAGCAGAAGAAGAC
AATGAGGACCTCCCACGTGGTGACTGCGAGGCAGAAGTACGGCCATCGAA
CGGCGGCCAGCCATGCGGAGAACCATCCGCCGGGCAGGCAGACGCACAAG
GGGGGCGACGGGCAGCAAAGTTCAAGAAGAACGGGAAAGGTCGATGCAAC
GGTGGCGGGGTGATCGACCTGTCCGACGAGGTGGTCGAGCCACCGGAGGG
ACTGCTGCCGATGGAGCTGGGTGAGCACCTCAGGCACACCCCTCTCATTC
GCCGTTGTCGGCAGGGGGTTCAATAG
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