mRNA_Ecto-sp13_S_contig17266.5135.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI) HSP 1 Score: 370 bits (950), Expect = 3.670e-115 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 1
Query: 1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSSKEKLGVSSGG 573
GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSS+KEKLGVSS G
Sbjct: 1626 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSAKEKLGVSSAG 1816
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A6H5JQE5_9PHAE (Sister chromatid cohesion protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE5_9PHAE) HSP 1 Score: 326 bits (835), Expect = 3.040e-103 Identity = 168/188 (89.36%), Postives = 170/188 (90.43%), Query Frame = 1
Query: 1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSSKEKLGVS 564
GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVV NPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGG GGGCSIVGPAYTLCVRPQRPSRYSCLRLL+SLFSEAKAWEL+SFVSSSKEKLGVS
Sbjct: 298 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVV-----------------NPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGMGGGCSIVGPAYTLCVRPQRPSRYSCLRLLLSLFSEAKAWELSSFVSSSKEKLGVS 468
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S2WUP5_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUP5_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.450e-36 Identity = 73/164 (44.51%), Postives = 104/164 (63.41%), Query Frame = 1
Query: 16 QRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEA 507
++V DQD ESSVVGGVLQ+H+A +L LF + +RAA ++LLGVMLRQGLVNP+ V P ++A+ GDS+ +R EA RL VED K+ EF+RTR+L+G+ +++ Q+ + PLL T S+ Y C+R R R + LR +SLF ++
Sbjct: 1 RQVTSDQDSESSVVGGVLQLHVAKILRLLFEAHSELRAACLALLGVMLRQGLVNPLQVFPYVVAMLGDSSAEIRQEALRLALVEDDKHPEFLRTRILEGVCLSFQLQKFTCPEIAPLLMETTGPRQFKHS--SLFSTIYASCIRSNRQKRNAVLRGFLSLFQQS 162
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: W7TH99_9STRA (Sister chromatid cohesion protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH99_9STRA) HSP 1 Score: 143 bits (361), Expect = 5.290e-36 Identity = 78/179 (43.58%), Postives = 113/179 (63.13%), Query Frame = 1
Query: 1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWR-----PLLPSTDPAAGGTGGG---CSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKA 513
GV+V QRV+GDQD E+S+VGGV+Q HL ++ LF R+ +R AA+ +L V+ RQGLVNP+ +P L+AL D +RA A+R L +E K+ EF+ R+L+G+ ++YTFQ+ +L L+ + + GG GG S +GP Y+ C+R R RYS LR L++LF E A
Sbjct: 1251 GVSVRQRVKGDQDAEASIVGGVIQEHLDSIKHLLFDRDDQLRTAALGILSVLHRQGLVNPLQTLPALVALQADPFSAIRAHAYRQLLIEHEKHPEFLPARILEGVSLSYTFQRRILSGRARGGTGELISAVVSSGGGEGGWEGRQSFLGPVYSTCLRQNRKHRYSFLRNLLALFEEKTA 1429
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA) HSP 1 Score: 115 bits (288), Expect = 3.200e-26 Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 1
Query: 1 GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKAWELASFVSSSKEKL 555
G++VAQRV+GDQD ESSVVGGVLQ+H+ AV L+H N +GLV+P++ VP L+AL D A VR+EA R + VED K + ++ R++DG+F+AY + LLP+ DP + G S+ Y+ C++ +R LR + SLF E ++ + +++++L
Sbjct: 1282 GISVAQRVRGDQDSESSVVGGVLQLHVPAVRRLLYHENV---------------EGLVDPLETVPHLVALQSDPAAPVRSEAMRQIMVEDEKRRDVVQMRVMDGMFLAYAWTAAAPV---VLLPADDPISDAHGPS-SVFSAIYSTCIQQAFGARNVFLRHVTSLFEERSRDKVKVLMQTARDRL 1447
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S2UG10_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG10_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.830e-19 Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 1
Query: 4 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSR 465
+T +++V GDQDG+SS+ GGVL H + + N +R A L+ ++LRQG +NP++ VP L AL GD A VRA A +LL +E +K + +R R+ G+ A+TFQ+ V D + P GG SI + V+P + R
Sbjct: 1332 ITASKKVSGDQDGDSSIFGGVLAQHSSRLYQITSCGNAKLRLACCDLISILLRQGQINPMETVPYLFALQGDIGAPDVRALALKLLIIEGTKRPDMMRQRVRAGIKRAFTFQREVYPDKKATAVICSPG----GGVESIFASIFKESVQPSKVQR 1482
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 7.190e-19 Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 4 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCS----IVGPAYTLCVRPQRPSRYSCLRLLMSLF 498
+T + ++ GDQDG+S++VGGVL H + + + + +R A + L+G +LRQGL+NP++ VP LLAL GD + +R A +LL E K + +R R+ G+ A+ FQ+ V P T TG G + I G + +R R R + L+SLF
Sbjct: 1327 ITTSVKISGDQDGDSTLVGGVLTQHSSRLYKLTTNTSPAIRHACVELIGHLLRQGLINPMETVPYLLALQGDVGSPLIRQLALKLLIKEGLKRPDMLRQRVCAGVKQAFVFQRLVY----PNSTVTAVIEQDTGDGITETECIFGLIFKELIRSSRVQRQGLFKSLLSLF 1492
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: B7GD31_PHATC (Sister chromatid cohesion protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD31_PHATC) HSP 1 Score: 93.6 bits (231), Expect = 1.330e-18 Identity = 56/170 (32.94%), Postives = 86/170 (50.59%), Query Frame = 1
Query: 4 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAK 510
VT++ R+ GDQDG++++ GGVL H + ++R VR AA+ L+G++LRQGLVNP + +P L AL GD +R+ A LL E + + +R R+ G AY FQ+ + G G I G + C+ + R + L+S F A+
Sbjct: 1296 VTLSNRISGDQDGDATLFGGVLTNHADRLFEMSQSKDRRVRYAALDLIGLLLRQGLVNPNECIPFLFALQGDVENAAIRSLALHLLMKEGERRPDALRQRICVGAKQAYDFQRRIYSQKDAASALITVRRGRVQGTECIFGSVFRNCISKSQKQRRGLFKNLLSFFETAE 1465
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A7S0C8U1_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8U1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 4.360e-18 Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 4 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGD-SAGFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEA 507
+++++++ GDQD ++S+VG VL H + + +R + L+G++LRQGL+NP++ VP LLAL GD VR A LL +E K + +R R+ G+ A+TFQ+ + + + D + C I Y + + + R L+SLF+ A
Sbjct: 41 ISLSKKISGDQDSDASLVGSVLNQHSTRLFQLTSSVHPKIRLVTLDLIGILLRQGLINPMETVPFLLALQGDVDVPAVRNLALNLLIMEGDKRPDMLRQRVRAGVRQAFTFQRIINKEKNVITAIVDSESENRDVEC-IFSAIYKRSLSTSKVQKQGLFRSLLSLFASA 208
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Match: A0A1Z5JG70_FISSO (Sister chromatid cohesion protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG70_FISSO) HSP 1 Score: 92.0 bits (227), Expect = 4.510e-18 Identity = 52/171 (30.41%), Postives = 92/171 (53.80%), Query Frame = 1
Query: 4 VTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGVMLRQGLVNPVDVVPQLLALGGDSA-GFVRAEAFRLLTVEDSKNGEFIRTRLLDGLFMAYTFQQHVLCDWRPLLPSTDPAAGGTGGGCSIVGPAYTLCVRPQRPSRYSCLRLLMSLFSEAKA 513
+++A+R+ GDQDG++++ GGVL H A + + +R A + ++G++LRQGLVNP + +P L A+ GD+ +R+ +F L++E K + +R R+ G+ A+ FQ+ V D + G + + C+ R R+ L+ L+SLF + A
Sbjct: 1241 LSLAKRISGDQDGDATLFGGVLTNHAARLFDLTRSKESSIRFAVLKVIGILLRQGLVNPNEAIPYLFAMQGDTEKSQIRSLSFEYLSIEGEKRPDTLRRRICAGVKHAWEFQRLVTSDEKHASAIIVTQEGKKTTIQCVFSRVFKECIGSSRKQRHGFLKNLISLFKLSSA 1411 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17266.5135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17266.5135.1 >prot_Ecto-sp13_S_contig17266.5135.1 ID=prot_Ecto-sp13_S_contig17266.5135.1|Name=mRNA_Ecto-sp13_S_contig17266.5135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp GVTVAQRVQGDQDGESSVVGGVLQMHLAAVLSRLFHRNRVVRAAAISLLGback to top mRNA from alignment at Ecto-sp13_S_contig17266:500..3145+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17266.5135.1 ID=mRNA_Ecto-sp13_S_contig17266.5135.1|Name=mRNA_Ecto-sp13_S_contig17266.5135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2646bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17266:500..3145+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17266:500..3145+ >mRNA_Ecto-sp13_S_contig17266.5135.1 ID=mRNA_Ecto-sp13_S_contig17266.5135.1|Name=mRNA_Ecto-sp13_S_contig17266.5135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17266:500..3145+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |