mRNA_Ecto-sp13_S_contig17256.5127.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17256.5127.1
Unique NamemRNA_Ecto-sp13_S_contig17256.5127.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: D7G061_ECTSI (Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G061_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.480e-36
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIVMDDGEHAAPTRANIIEAIE 207
            GKHRALLIGINY+GD S ELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIVMDDGEH APTRANIIEAIE
Sbjct:  147 GKHRALLIGINYVGDPSVELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIVMDDGEHTAPTRANIIEAIE 215          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: D8LTK1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 6.670e-34
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIVMDDGEHAAPTRANIIEAIE 207
            GKHRALLIGINY+GDKSAELKGCHNDVAQMKDYIVEHGY  E GEDLKIVMDDGEH APTRANIIEAIE
Sbjct:  143 GKHRALLIGINYVGDKSAELKGCHNDVAQMKDYIVEHGYSGE-GEDLKIVMDDGEHTAPTRANIIEAIE 210          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: D8LJ59_ECTSI (Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.890e-21
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIVMDDGEHAAPTRANIIEAIE 207
            G H+ALLIGINY G K  ELKGCHNDV QM++YI  HGYPA+ G +LKIV DDGEH  P++ NI++AI+
Sbjct:  164 GNHKALLIGINYTGGKG-ELKGCHNDVKQMREYITTHGYPAD-GANLKIVSDDGEHEEPSKENILKAIK 230          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: A0A8J9T537_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T537_PHATR)

HSP 1 Score: 78.2 bits (191), Expect = 3.250e-17
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYI-VEHGYPAEEGEDLKIVMDDGEHAAPTRANIIEA 201
            G  RALLIGINY+G +   L+GCHNDV  M +YI   HG+   E E++ I+MDDGEH APT AN+I A
Sbjct:   22 GTRRALLIGINYVGHEQGVLRGCHNDVKNMVEYIKAVHGF---EDENITILMDDGEHTAPTHANMIAA 86          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: A0A448YWV0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YWV0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.710e-16
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYIVE-HGYPAEEGEDLKIVMDDGEHAAPTRANIIEAIE 207
            G HRA+++GINY+G    EL+GCHNDV  MK YI+E HG+   E E++ I+MDDG H +PT+ N+I A E
Sbjct:  152 GVHRAVMVGINYVGHSPGELRGCHNDVLNMKKYIMEVHGF---EEENIVILMDDGIHTSPTKENMIAAYE 218          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: L1I610_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I610_GUITC)

HSP 1 Score: 80.1 bits (196), Expect = 4.900e-16
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   10 RALLIGINYIGDKSAELKGCHNDVAQMKDYIVEHGY-PAEEGEDLKIVMDDGEHAAPTRANIIEAIE 207
            +ALLIGINY+G K  EL+GCHNDV QMKDYI+++GY PA     ++++MDDG +  PTRANI+++I+
Sbjct:  195 KALLIGINYVGQKG-ELRGCHNDVLQMKDYILKNGYDPAS----MRVLMDDGSNMNPTRANILDSIK 256          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: MCA3C_PHATC (Metacaspase III c n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=MCA3C_PHATC)

HSP 1 Score: 78.2 bits (191), Expect = 1.750e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYI-VEHGYPAEEGEDLKIVMDDGEHAAPTRANIIEA 201
            G  RALLIGINY+G +   L+GCHNDV  M +YI   HG+   E E++ I+MDDGEH APT AN+I A
Sbjct:  122 GTRRALLIGINYVGHEQGVLRGCHNDVKNMVEYIKAVHGF---EDENITILMDDGEHTAPTHANMIAA 186          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: B8CEU9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEU9_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 2.090e-15
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYIVE-HGYPAEEGEDLKIVMDDGEHAAPTRANIIEA 201
            G  RA++IGINYIGD   EL GCHNDV  MK YI++ HG+   E +++ ++MDDGEH  PT  NI+ A
Sbjct:  124 GTRRAVMIGINYIGDNPGELSGCHNDVLNMKKYIMDVHGF---EEDNIVVLMDDGEHTEPTHDNIMNA 188          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: A0A836C803_9STRA (Metacapase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C803_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.200e-15
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    7 HRALLIGINYIGDKSAELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIVMDDGEHAAPTRANIIEA 201
            H+ALLIGINY+G +  ELKGCHNDV  MK+YI+E GY  +  + + ++MDDG+H  PT AN+ +A
Sbjct:  163 HKALLIGINYVGQQG-ELKGCHNDVEAMKEYIIEQGY-TDSPDTMMVLMDDGKHKDPTAANLAKA 225          
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Match: A0A182BPC6_9STRA (Metacaspase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A182BPC6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.570e-15
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYIVE-HGYPAEEGEDLKIVMDDGEHAAPTRANIIEA 201
            G  RA+++GINYIGD   EL GC NDV  MK YI++ HG+   E E++ I+MDDG H  PT+ANII+A
Sbjct:  151 GTRRAVMVGINYIGDDPGELSGCWNDVLNMKKYIIDVHGF---EEENIVILMDDGIHTEPTKANIIDA 215          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17256.5127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G061_ECTSI2.480e-3694.20Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D8LTK1_ECTSI6.670e-3492.75Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LJ59_ECTSI2.890e-2165.22Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A8J9T537_PHATR3.250e-1757.35Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A448YWV0_9STRA2.710e-1654.29Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
L1I610_GUITC4.900e-1658.21Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
MCA3C_PHATC1.750e-1557.35Metacaspase III c n=3 Tax=Phaeodactylum tricornutu... [more]
B8CEU9_THAPS2.090e-1554.41Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A836C803_9STRA2.200e-1555.38Metacapase n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A182BPC6_9STRA3.570e-1555.88Metacaspase n=1 Tax=Skeletonema marinoi TaxID=2675... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17256contigEcto-sp13_S_contig17256:295..703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score138.3
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D7G061
Preferred nameMCA5
Model size210
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsKOG1546@1,KOG1546@2759
Cds size210
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462901.4054878-CDS-Ecto-sp13_S_contig17256:294..3931681462901.4054878-CDS-Ecto-sp13_S_contig17256:294..393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17256 295..393 -
1681462901.4167094-CDS-Ecto-sp13_S_contig17256:592..7031681462901.4167094-CDS-Ecto-sp13_S_contig17256:592..703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17256 593..703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17256.5127.1prot_Ecto-sp13_S_contig17256.5127.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17256 295..703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17256.5127.1

>prot_Ecto-sp13_S_contig17256.5127.1 ID=prot_Ecto-sp13_S_contig17256.5127.1|Name=mRNA_Ecto-sp13_S_contig17256.5127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
GKHRALLIGINYIGDKSAELKGCHNDVAQMKDYIVEHGYPAEEGEDLKIV
MDDGEHAAPTRANIIEAIE*
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mRNA from alignment at Ecto-sp13_S_contig17256:295..703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17256.5127.1 ID=mRNA_Ecto-sp13_S_contig17256.5127.1|Name=mRNA_Ecto-sp13_S_contig17256.5127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=409bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17256:295..703- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAAGCACCGGGCCCTCCTCATCGGCATCAACTACATCGGGGATAAGTC GGCAGAGCTCAAGGGCTGCCACAACGACGTCGCCCAGATGAAGGACTACA TTGTGGAGCACGTGAGCATCAACAAAGACACCTTTCTTTCGAACATGGCC AAGATGGCGGGGTCTTGATCCACATCTCCATGTCCAAACTTCTACAGTAC CATGCTCAGGGACTACGCAAGTGGACAAAAGGCGAAATTTCATCGGTGGG GGTGATTCCCACTGCATGCCATGCCACCCCGAATATCTCACGCATTCTCA AATTTTTCAGGGTTATCCTGCCGAAGAAGGGGAAGACCTGAAGATCGTGA TGGATGACGGGGAGCATGCCGCCCCTACCAGGGCCAACATCATCGAAGCC ATCGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17256:295..703-

>mRNA_Ecto-sp13_S_contig17256.5127.1 ID=mRNA_Ecto-sp13_S_contig17256.5127.1|Name=mRNA_Ecto-sp13_S_contig17256.5127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17256:295..703- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAAGCACCGGGCCCTCCTCATCGGCATCAACTACATCGGGGATAAGTC
GGCAGAGCTCAAGGGCTGCCACAACGACGTCGCCCAGATGAAGGACTACA
TTGTGGAGCACGGTTATCCTGCCGAAGAAGGGGAAGACCTGAAGATCGTG
ATGGATGACGGGGAGCATGCCGCCCCTACCAGGGCCAACATCATCGAAGC
CATCGAGTGA
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