mRNA_Ecto-sp13_S_contig17245.5120.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17245.5120.1
Unique NamemRNA_Ecto-sp13_S_contig17245.5120.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17245.5120.1 vs. uniprot
Match: D7FPD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD0_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 5.430e-132
Identity = 189/204 (92.65%), Postives = 193/204 (94.61%), Query Frame = 1 
Query:    1 QPPVHPTCRKVYWSGCGFGWVVWILTTAAAGDENWGELPAGDGYGVTTGFACDEGDANDSFCTAHRNFAAAQKAATVMCSVAVLLFTVSFFRPSHARHGSSKGLGLVGGVFMALFTFFQMVSILFLAKSIQEYNRYGGDAYEAKTGDTYGLGITAFVFGLIQVIIVLGCFGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH 612
            +PPVHPTCRKVYW GCGFGWVVW+LTT AAGDENWGELPAGDGYGV TGFACDEGD NDSFCTAHRNFAAAQKAATVMCSVAVLLFTVSFFRPS AR+GSSKGLGLVGGVFMALFTF QMVSILFL KSIQEYNRYGGDA+ AKTGDTYGLGITAFVFGLIQVIIVLG FGQAANGPLLSCTRRIS  DDMGAGSATPTPRGRH
Sbjct:   15 EPPVHPTCRKVYWFGCGFGWVVWVLTTPAAGDENWGELPAGDGYGVATGFACDEGDVNDSFCTAHRNFAAAQKAATVMCSVAVLLFTVSFFRPSQARYGSSKGLGLVGGVFMALFTFCQMVSILFLVKSIQEYNRYGGDAFMAKTGDTYGLGITAFVFGLIQVIIVLGFFGQAANGPLLSCTRRISEADDMGAGSATPTPRGRH 218
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BLAST of mRNA_Ecto-sp13_S_contig17245.5120.1 vs. uniprot
Match: A0A6H5KLK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK4_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 7.770e-83
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 1 
Query:  190 AHRNFAAAQKAATVMCSVAVLLFTVSFFRPSHARHGSSKGLGLVGGVFMALFTFFQMVSILFLAKSIQEYNRYGGDAYEAKTGDTYGLGITAFVFGLIQVIIVLGCFGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH 612
            A R FAAAQKAATVMCSVAVLLFTVSFFRPSHARHGSSKG GLVGGVFMALFTFFQMVSILFL KSIQEYNRYGG A+EAKTGDTYGLG+TAFVFGLIQVIIVLG FGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH
Sbjct:    5 ADRKFAAAQKAATVMCSVAVLLFTVSFFRPSHARHGSSKGFGLVGGVFMALFTFFQMVSILFLVKSIQEYNRYGGGAFEAKTGDTYGLGMTAFVFGLIQVIIVLGFFGQAANGPLLSCTRRISAPDDMGAGSATPTPRGRH 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17245.5120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPD0_ECTSI5.430e-13292.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLK4_9PHAE7.770e-8394.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17245contigEcto-sp13_S_contig17245:161..3123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1504
Hectar predicted targeting categorysignal peptide
Exons4
Cds size384
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17245.5120.1prot_Ecto-sp13_S_contig17245.5120.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17245 1059..2028 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.907329-UTR-Ecto-sp13_S_contig17245:160..3771681462900.907329-UTR-Ecto-sp13_S_contig17245:160..377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17245 161..377 -
1681462900.9173954-UTR-Ecto-sp13_S_contig17245:386..10581681462900.9173954-UTR-Ecto-sp13_S_contig17245:386..1058Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17245 387..1058 -
1681462900.9547136-UTR-Ecto-sp13_S_contig17245:2028..20661681462900.9547136-UTR-Ecto-sp13_S_contig17245:2028..2066Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17245 2029..2066 -
1681462900.9691162-UTR-Ecto-sp13_S_contig17245:2930..31231681462900.9691162-UTR-Ecto-sp13_S_contig17245:2930..3123Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17245 2931..3123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.9309082-CDS-Ecto-sp13_S_contig17245:1058..12761681462900.9309082-CDS-Ecto-sp13_S_contig17245:1058..1276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17245 1059..1276 -
1681462900.9426944-CDS-Ecto-sp13_S_contig17245:1862..20281681462900.9426944-CDS-Ecto-sp13_S_contig17245:1862..2028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17245 1863..2028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17245.5120.1

>prot_Ecto-sp13_S_contig17245.5120.1 ID=prot_Ecto-sp13_S_contig17245.5120.1|Name=mRNA_Ecto-sp13_S_contig17245.5120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MCSVAVLLFTVSFFRPSHARHGSSKGLGLVGGVFMALFTFFQMVSILFLA
KSIQEYNRYGGDAYEAKTGDTYGLGITAFVFGLIQVIIVLGCFGQAANGP
LLSCTRRISAPDDMGAGSATPTPRGRH*
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mRNA from alignment at Ecto-sp13_S_contig17245:161..3123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17245.5120.1 ID=mRNA_Ecto-sp13_S_contig17245.5120.1|Name=mRNA_Ecto-sp13_S_contig17245.5120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17245:161..3123- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCACCGGTTCACCCGACATGCCGCAAAGTGTATTGGTCCGGCTGTGG
TTTTGGCTGGGTGGTGTGGATCTTGACGACTGCGGCTGCCGGAGACGAGA
ACTGGGGAGAGCTGCCCGCGGGGGACGGGTACGGCGTGACCACCGGGTTC
GCCTGCGACGAGGGAGACGCTAACGACTCATTTTGCACAGCTCGTGAGTC
GCTCTCAGACTAAATACCGTTGTACGCATTTGGTTCTGTAACCGTGGGGA
GAATACCTCATTGTGTAACCTCGCTAGGAAAAAGTGCGTGGATTCAATGC
ATGTACGGGTTGTCGTTTAGGAGGTTCTAGAGGTTTCTCGGCGTTGTTGG
TGCGATGCTTTGTCTCAGTAAGAGTACGTTGTTCATTGACAGTGGGTGAT
TCAACGTTGTCAATTGGATTTCTTCTTCTATCCTGCTTTTCGGGAGGCTT
TTGCTCCTGACTAGACACAAAACCTCTTCCCTCGCTTCCCAAGCACAGGG
GTATAGTTTCAATCGCTGGGACCGGCGAAGTCGTCTCATGAGAGAACAAG
GTGTAATTTTTCATGTGCTTGCAGAATCTTCATTTTCTACGCTTGCGAGA
GCGGAGGCGGGCTAATTTGTACCAGTGTTTGGTTTTAGTCAGAAATCGAG
TACAGACGTTGGAGGCATGGGAACGTTCTTCGACGCTTCGCTTGCGGAAC
GTTTAGCACTCAGTGTTCAAAGTAAAGCCAAAACCCGTTCCATGGAATAT
CCTCTCCCAGGTCATCAAGGCACTGTCTGTCACTGAAATATTTAGTAGGA
TGCACATCTGGCCCTCGCGTGGTTCGTCTTGCTCATTGCTTGATGATACA
GGCGGTGGAGGGCCGAAACACCAGCACTAGTAGTGGCAATAGTAGCACCA
GTGGTATTAAAGAGCAGTTTATCGGTACTCCAGGGATCATCATGCGCGCT
GTGGCTTCCAGGGTCAAAAAGTAACTAGTTCGCATGTGCCACCCGTTGTT
CGTCCTCATTTGCGTGTTGCTGGTGCCCGGCGGTCCAACACATGGCCACC
GTTGCAGACAGAAACTTCGCGGCGGCGCAGAAAGCAGCTACCGTCATGTG
CTCCGTGGCCGTGCTGCTTTTCACGGTCTCCTTCTTTCGGCCGTCTCATG
CTAGGCACGGCTCCTCCAAGGGCCTTGGCTTGGTCGGCGGCGTGTTCATG
GCCCTATTCACATTCTTCCAGATGGTGTCAATTCTGTTCCTCGCCAAGAG
CATCCAAGAATGTAAGTGTAAGAGCGTTCCTGACTCCCGTGTTGTGCAGC
AGTGGCCTTGAACGAGAAGAACGGAGTACACAACACAAATATATGGGAAC
TTTCAAGCCGGTTCTTGCGGCGGTAAAACACCGTCAACAGGTTGTTGTCG
AGGTGTGATGGACATCTTGTTCACGCCCGTCTGAGATACATTCTTTTGGT
TGTACTACCAAGGAGAGTCGAATGCACCGAGCTAAGGACGCCTGCTTTAC
AACAAGACATTGAGTGGGAGCAAGAACGCTAGCTATGCCCTGCAACTGGA
CAAAACATACCGAAACTATCTTCTTGGGCAAATCCTGATCAAAAAGATGT
TGGATGTTGGGTGGCAAGCTTGCGCGTCCGTGAGGTTTCTGGGACCCTAA
TTTCACGTCCTTGAAGTAGAGACCCCCTTTCTTGCTTGTGAAAAAAATAC
CTCAAGAAAGACGGCCAGGTATGCATGCAAAATGTGACAGCCGACACACC
GGAATAGAGATTGCCCTCTTCCGTCTGCGTTGTTGTGTGCTGCACACGGG
ACTACACGATGACCCCCCCCTTTCCCTTACATGACCATGCACAACAGACA
ACCGCTATGGTGGCGATGCCTACGAGGCCAAAACCGGGGACACCTATGGC
TTGGGCATAACCGCTTTCGTGTTTGGCCTCATCCAAGTCATCATCGTACT
GGGCTGCTTCGGCCAGGCCGCGAATGGCCCCCTGTTGTCCTGCACCCGGC
GAATTTCGGCCCCGGATGACATGGGTGCTGGTTCTGCCACTCCTACCCCT
CGAGGCCGCCATTAGACGTTGAACGAGGACGGCGTGCAGGATACTCAGGC
CATGCTGGCCATTGGCGTGCGACGTAGCCAAGCATGAAGTTACCTTTTCG
AGTGTGGAGGCAGTGTACATGCGTCAATATGCCGACGATGATTGTTTTAC
GTATTACTTGTCTCCTCAACCACGCCGGATACTCTAGCCCGCCACTGCAT
GGCGAGCTGCACCACGTCGGCGTGCTATGTACGCGAAGCACGTTTCGAAG
GGAACGCGTAACGCAGCATTAATTGTTGTGTTACGTTGATCCCCTGGTAC
CGATGACGGAAGGGTGATGCGCTGGGCTGGCGGAGCATACCCACGCTTTC
TGTTGAAATGCTTCCCAGAAAACGTGTACTTCAAGAGCATGGATGCCCGC
TGAATTGGCGATTGGACCTACTTCGTGTTTCAATTTGGAACGGGTCGTCC
AAGCCTACAAACTATCGGGCTCGTACACGAAACAGTGCAAGAGTTGCAAG
AGAAACGTAAAGAACAAAAGAGAGTGTAGATCAATGCTGGTAGAAAGTGG
TCCCGCCCGTTGTGAAGCTTAAGTGTGTGGGTGGGCACAGTTCCCCTCGT
TTCCCGTCGATTGGCGTCGCCGTGGAATATTAGGTTGTCTTGTTGTTCAG
AAAAACGGCAAGTTCGCGCACGTCGCACGTCTCTATTGTCTTGTAGAACA
GAAAAGCGGCAAGTTTGCGCATGTCTCTGCGTGCAATAGTGTCCGCGCAC
GCAATGAGACGGAGCGCGCGCGGGGGTGAGGGTGTGCACGTGGAGTGTGT
GATTCGTGCTTGGTGCTGACCGCCAGCTGTATTTTATTTGCCGAACATGG
CGAAGTCCTTCTTTCCACCGCCCGTTTGCCTTTCCATACCCCTAATATAG
TCTGGTGGTGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17245:161..3123-

>mRNA_Ecto-sp13_S_contig17245.5120.1 ID=mRNA_Ecto-sp13_S_contig17245.5120.1|Name=mRNA_Ecto-sp13_S_contig17245.5120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17245:161..3123- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTCCGTGGCCGTGCTGCTTTTCACGGTCTCCTTCTTTCGGCCGTC
TCATGCTAGGCACGGCTCCTCCAAGGGCCTTGGCTTGGTCGGCGGCGTGT
TCATGGCCCTATTCACATTCTTCCAGATGGTGTCAATTCTGTTCCTCGCC
AAGAGCATCCAAGAATACAACCGCTATGGTGGCGATGCCTACGAGGCCAA
AACCGGGGACACCTATGGCTTGGGCATAACCGCTTTCGTGTTTGGCCTCA
TCCAAGTCATCATCGTACTGGGCTGCTTCGGCCAGGCCGCGAATGGCCCC
CTGTTGTCCTGCACCCGGCGAATTTCGGCCCCGGATGACATGGGTGCTGG
TTCTGCCACTCCTACCCCTCGAGGCCGCCATTAG
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