mRNA_Ecto-sp13_S_contig17213.5108.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17213.5108.1
Unique NamemRNA_Ecto-sp13_S_contig17213.5108.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17213.5108.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.350e-42
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 LVASPALPVAPYTVPSDGEGGVPLSQHEHGESLRVVSGIAVSFDGQTSRYLPLPPLLPSRSAAWHQPSSDCADHDGQANGGGSRVEP 261
            LVASPALPVAPYTVPS GEGGVPLSQ  HGESLRVVSGIA+SFDGQTSRYLPLPPLLPSRSAAWHQ  SDCADH  + +GGGSRVEP
Sbjct: 1511 LVASPALPVAPYTVPSGGEGGVPLSQRGHGESLRVVSGIAISFDGQTSRYLPLPPLLPSRSAAWHQSPSDCADHARRTSGGGSRVEP 1597
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17213.5108.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.040e-8
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 LVASPALPVAPYTVPSDGEGGVPLSQHEHGES 96
            LVASPALPVAPYTVPS GEGGVPLSQ  HGES
Sbjct: 1395 LVASPALPVAPYTVPSGGEGGVPLSQRGHGES 1426
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17213.5108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM15_ECTSI4.350e-4287.36DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L306_9PHAE1.040e-890.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17213contigEcto-sp13_S_contig17213:1882..2746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score155.2
Seed ortholog evalue1.4e-35
Seed eggNOG ortholog2880.D7FM15
Model size262
KEGG koko:K02349
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006287,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
Exons2
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
Cds size261
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.0448966-CDS-Ecto-sp13_S_contig17213:1881..19761681462900.0448966-CDS-Ecto-sp13_S_contig17213:1881..1976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17213 1882..1976 +
1681462900.0557883-CDS-Ecto-sp13_S_contig17213:2580..27461681462900.0557883-CDS-Ecto-sp13_S_contig17213:2580..2746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17213 2581..2746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17213.5108.1prot_Ecto-sp13_S_contig17213.5108.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17213 1882..2746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17213.5108.1

>prot_Ecto-sp13_S_contig17213.5108.1 ID=prot_Ecto-sp13_S_contig17213.5108.1|Name=mRNA_Ecto-sp13_S_contig17213.5108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
LVASPALPVAPYTVPSDGEGGVPLSQHEHGESLRVVSGIAVSFDGQTSRY
LPLPPLLPSRSAAWHQPSSDCADHDGQANGGGSRVEP
back to top

mRNA from alignment at Ecto-sp13_S_contig17213:1882..2746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17213.5108.1 ID=mRNA_Ecto-sp13_S_contig17213.5108.1|Name=mRNA_Ecto-sp13_S_contig17213.5108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17213:1882..2746+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGGCATCACCAGCATTGCCAGTGGCGCCTTACACGGTTCCGTCGGA
CGGGGAGGGCGGCGTTCCTCTGTCTCAGCATGAGCATGGAGAATCGTGAG
TGTTTGGTGTGAGGGGAGACGTTTGATGTTGGACGACTGCAGCGAGAGCG
GAGGGTTGTAAGTTTGTGGCTACGAGTGTCAGAGGTGATGCCGTATTTCC
GTCCCGTCCGGGGGTGGGACCTGTCTCTATGCTATGTCAAGTGAGGTGTA
GCCTCTAGCCTGCATGGCACTTTTTCCTCCGGTCCACGCATATGGTGTTC
TCTGTGTGAGGGGCTTCGTGGCAAAACGGGGTCGTGGTCGATGAAGTAGT
GGTTGAGGCAAGCCAGAGGCTCAAACTCTTGTTATTTCGGAGTGAATCGG
GTCTCACCAGTAATGTCCTAGGGGTCCCCGTGGGTGTCCGCGGCCAGAAG
GTTCGGCGTGAGCGGCAGGTTTCATGAACACTCCCTCTAATAGAAACTCT
GGGATCGAAAGCATGTGTGCAGGTCGTTTCGTTCCGAAGCAGTTTGTATC
CGGCGGTTGCACCCCACTCGAAGCTCACGTTCTCACCTAGGAAGGAGTAC
ATTTGAATTTTGAAATGAATCGTATGAGACCCCGGTCCCCCTTGTTCCCT
CCCGCCGATCGCATTCCCTCCCGGCCGCCCCCCTCTCGTCCACACGAAGG
TTGCGAGTGGTGAGCGGCATTGCCGTCTCCTTTGACGGTCAGACGTCACG
CTATCTGCCGCTGCCTCCTCTCCTGCCGAGCCGTTCCGCCGCGTGGCATC
AGCCCTCCTCTGACTGCGCCGACCACGATGGACAAGCCAACGGGGGGGGG
AGCCGTGTTGAACCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17213:1882..2746+

>mRNA_Ecto-sp13_S_contig17213.5108.1 ID=mRNA_Ecto-sp13_S_contig17213.5108.1|Name=mRNA_Ecto-sp13_S_contig17213.5108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17213:1882..2746+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGGCATCACCAGCATTGCCAGTGGCGCCTTACACGGTTCCGTCGGA
CGGGGAGGGCGGCGTTCCTCTGTCTCAGCATGAGCATGGAGAATCGTTGC
GAGTGGTGAGCGGCATTGCCGTCTCCTTTGACGGTCAGACGTCACGCTAT
CTGCCGCTGCCTCCTCTCCTGCCGAGCCGTTCCGCCGCGTGGCATCAGCC
CTCCTCTGACTGCGCCGACCACGATGGACAAGCCAACGGGGGGGGGAGCC
GTGTTGAACCT
back to top