mRNA_Ecto-sp13_S_contig1721.5105.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1721.5105.1 vs. uniprot
Match: A0A6H5KE12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE12_9PHAE) HSP 1 Score: 817 bits (2110), Expect = 1.530e-288 Identity = 497/716 (69.41%), Postives = 511/716 (71.37%), Query Frame = 1
Query: 1 PTSAGSPRKKDFRSFTAVKKVAPLSPVGGGGTSPSAWSTQAFASPGGGGGAERRARLDVSPWRARKPGQGLSPRRQASPSSSPRSLAKGDWRRGPAGVRPSQAGASRSLSPLAGGRAAGFGKTSSVRFGRGKDPPGAGFGAGSRGASSSMRQVSQEEPASPLLSLIGXXXXXXXXXXXXRRPRATPSTLPSVNSGGGSGCGDATAVVAQDADGHEQATTAPPLCEDKLEEAVDEASGHGGITAGDGGASTAAAVVQMPESCGAEKEEASADADDDRANGKAEGGALFAERKEASGEGRAEGGACDGTAGLLTVETKDFGETSGCTAVFHNPAGAEHDDPLRPTLVVTSRPSPLRAQLQSPITQDPSPCTSDGLHFAVSDVIPPDGGPEGNEAEQLPPSPQATAAVVREDARPPLHGNGGGFKGHVPPGVRIVGRTAAGDQHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXXGTGPPRGGEVKLFVSTPTGEGDASDLSLWVTTRGSEEGGGEGAATSGDAAASPLPSPPSVRLSPAAVNSLEDDDPGIDAGDGASTAVDLEEEDLEKDFRNGLGFGAQNALETRSDDGEGGVSGEVENEAEVLLEEEGATRCLLQPSERPEVAEEAGGDNEDPETAVSQGEVENAAEGLSGADAPLLDSSKKIPLTTAKTAANVEKTEVGGMEGPWEAVARVFCGIFNFCRPP 2148
PTSAGSPRKKDFRSFTAVKKVAPLSPVGGGGTSPSAWSTQAF SPGGGGGAERR RLD+S WRAR PGQGLSP RQ PSSSPRSLAKGDWRRGPAGVRP QAGASRSLSPL+GG AA FGKTSSVR EP L + DG EQAT APPLC+ K EEA DEASG GG TAGDG VVQ PESCGAEKEEASADADD RANGKAE GALFAE +EASGEGRAEG A DGTAGLLTVETKDFGETSGCTAV +NPAG EHDDPLRPTLVVTS PSPLRAQLQSPITQDPSPCTSD LHFAVSD IPPDGGP G+ A QLPPSPQATAA VRED+R GVRIVGRTAAG+Q GA XXXXXXXXXXX C GTGPPRGGEVKLFVSTPTGEGD+SDLSLWVTTRGS SPLPSPPSVRLSP AV SLEDDDPGID GDGASTA +LEEEDLEKD RNGLGFGA+NA+E RS DGE G SGE ENE EVL E E AT CLLQPSE PE AEE GGDNEDPE AVSQGEVENAAEG S AD PLLDSSK IP TTA+TAANVEKTEVGGMEGPWEAVARVFCGIFNFCRPP
Sbjct: 90 PTSAGSPRKKDFRSFTAVKKVAPLSPVGGGGTSPSAWSTQAFTSPGGGGGAERRGRLDLSSWRARTPGQGLSPPRQGPPSSSPRSLAKGDWRRGPAGVRPGQAGASRSLSPLSGGTAACFGKTSSVR-----------------------------EPRCKLFD---------------------------------------------ETDGLEQATMAPPLCDGKPEEAADEASGDGGFTAGDGXXXXXXXVVQ-PESCGAEKEEASADADDGRANGKAERGALFAEWEEASGEGRAEGYASDGTAGLLTVETKDFGETSGCTAVVNNPAGVEHDDPLRPTLVVTSSPSPLRAQLQSPITQDPSPCTSDSLHFAVSDGIPPDGGPGGDAAGQLPPSPQATAAAVREDSRXXXXXXXXXXXXXXXXGVRIVGRTAAGEQPGAASXXXXXXXXXXXAGEAPAGRRDRAALSSSPSSV--CSEGGGTGPPRGGEVKLFVSTPTGEGDSSDLSLWVTTRGSXXXXXXXXXXXXXXXXSPLPSPPSVRLSPVAVKSLEDDDPGIDPGDGASTAANLEEEDLEKDLRNGLGFGAKNAIEARSGDGEAGASGEEENEVEVLPEGE-ATCCLLQPSEGPEAAEEGGGDNEDPEPAVSQGEVENAAEGPSRADVPLLDSSKTIPSTTAETAANVEKTEVGGMEGPWEAVARVFCGIFNFCRPP 727
BLAST of mRNA_Ecto-sp13_S_contig1721.5105.1 vs. uniprot
Match: D8LEU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU0_ECTSI) HSP 1 Score: 736 bits (1899), Expect = 1.760e-255 Identity = 455/689 (66.04%), Postives = 471/689 (68.36%), Query Frame = 1
Query: 118 QAFASPGGGGGAERRARLDVSPWRARKPGQGLSPRRQASPSSSPRSLAKGDWRRGPAGVRPSQAGASRSLSPLAGGRAAGFGKTSSVRFGRGKDPPGAGFGAGSRGASSSMRQVSQEEPASPLLSLIGXXXXXXXXXXXXRRPRATPSTLPSVNSGGGSGCGDATAVVAQDADGHEQATTAPPLCEDKLEEAVDEASGHGGITAGDGGASTAAAVVQMPESCGAEKEEASADADDDRANGKAEGGALFAERKEASGEGRAEGGACDGTAGLLTVETKDFGETSGCTAVFHNPAGAEHDDPLRPTLVVTSRPSPLRAQLQSPITQDPSPCTSDGLHFAVSDVIPPDGGPEGNEAEQLPPSPQATAAVVREDARPPLHGNGGGFKGHVPPGVRIVGRTAAGDQHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--CXXXXGTGPPRGGEVKLFVSTPTGEGDASDLSLWVTTRGSEEGGGEGAATSGDAAASPLPSPPSVRLSPAAVNSLEDDDPGIDAGDGASTAVDLEEEDLEKDFRNGLGFGAQNALETRSDDGEGGVSGEVENEAEVLLEEEGATRCLLQPSERPEVAEEAGGDNEDPETAVSQGEVENAAEGLSGADAPLLDSSKKIPLTTAKTAANVEKTEVGGMEGPWEAVARVFCGIFNFCRPPGGEGRQGGKR 2178
+AF SPGGGGGAERR RLD+SPWRARKPGQGLSP RQASPSSSPRSLAKGDWRRGPAGVRP QAGASRSLSPLAGGRAAGFGKTSS+RFGRG DP GAGFGAGSRGASSS RQ MPESC AE+EEA DADDD ANGK EGGAL AER+E SGEGRAEG A DGTAGLLTVETKDFGE SG T V +NPAGAEHDDPLRPTLVVT+RPSPLRAQLQSPITQDPSPCTSDGLHFA+SD IPPDGGP G+ A +LPPSPQAT AVVRE RPPLHGN PGVRIVGRTAAG Q GAXXXXXXXXXXXXXXX C XXX LWVTTRGSEEGGGEGAAT GD AASPLPSP SVRLSP A SLEDDDPGIDAGDGAS AVDLEEE EKD NGLG GA+N LE RS DGEGG SGE ENEAEVLLEEEGATRCLLQPSE PE AEEAGGDNEDPETAVSQGEVE+AAE LSGA+ PLLDSSK IP TTA+TAANVEKTEVGGMEGPWEAVARVFCGIFNFCRPPGGEG Q G++
Sbjct: 218 EAFTSPGGGGGAERRGRLDLSPWRARKPGQGLSPPRQASPSSSPRSLAKGDWRRGPAGVRPGQAGASRSLSPLAGGRAAGFGKTSSMRFGRGIDPLGAGFGAGSRGASSSTRQ--------------------------------------------------------------------------------------------------------MPESCAAEREEAEVDADDDGANGKEEGGALLAEREEVSGEGRAEGNASDGTAGLLTVETKDFGEMSGGTTVVNNPAGAEHDDPLRPTLVVTARPSPLRAQLQSPITQDPSPCTSDGLHFAISDGIPPDGGPGGDAAGRLPPSPQATGAVVREGPRPPLHGNXXXXXXXXXPGVRIVGRTAAGKQAGAXXXXXXXXXXXXXXXALAGEAPTGRRDRSALSSSPSSVCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWVTTRGSEEGGGEGAATPGDGAASPLPSPLSVRLSPVAAKSLEDDDPGIDAGDGASNAVDLEEEVFEKDLENGLGLGAKNGLEARSGDGEGGASGEAENEAEVLLEEEGATRCLLQPSEGPEAAEEAGGDNEDPETAVSQGEVESAAESLSGAEVPLLDSSKTIPSTTAETAANVEKTEVGGMEGPWEAVARVFCGIFNFCRPPGGEGGQRGEK 802 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1721.5105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1721.5105.1 >prot_Ecto-sp13_S_contig1721.5105.1 ID=prot_Ecto-sp13_S_contig1721.5105.1|Name=mRNA_Ecto-sp13_S_contig1721.5105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=727bp PTSAGSPRKKDFRSFTAVKKVAPLSPVGGGGTSPSAWSTQAFASPGGGGGback to top mRNA from alignment at Ecto-sp13_S_contig1721:3..3121+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1721.5105.1 ID=mRNA_Ecto-sp13_S_contig1721.5105.1|Name=mRNA_Ecto-sp13_S_contig1721.5105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1721:3..3121+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1721:3..3121+ >mRNA_Ecto-sp13_S_contig1721.5105.1 ID=mRNA_Ecto-sp13_S_contig1721.5105.1|Name=mRNA_Ecto-sp13_S_contig1721.5105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2181bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1721:3..3121+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |