mRNA_Ecto-sp13_S_contig17209.5104.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17209.5104.1
Unique NamemRNA_Ecto-sp13_S_contig17209.5104.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.310e-50
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:   16 RWEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKVDPRMVR 288
            RWEELM+GSVLRWVPD SRVSTHIVAFDMDGTLIKTKSG  RFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGT KVDPRM++
Sbjct:  261 RWEELMEGSVLRWVPDRSRVSTHIVAFDMDGTLIKTKSGK-RFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTGKVDPRMLK 350
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: UPI000E6E4103 (uncharacterized protein F21D5.5-like n=2 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E4103)

HSP 1 Score: 79.7 bits (195), Expect = 2.500e-15
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   19 WEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKVDPR 279
            WE++ +G +L +       S+ I A+D+DGTLIKTKSG+V F    DDWQ+   +IP  L++   +GYK+ I +NQ G+G  K DP+
Sbjct:   43 WEDVSNGKLLIFTKSGVTASSKIAAYDLDGTLIKTKSGLV-FAKNKDDWQIAFKQIPKHLKELETQGYKLVIFTNQAGIGKGKTDPK 128
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: UPI000E6E51B5 (uncharacterized protein F21D5.5-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E51B5)

HSP 1 Score: 79.7 bits (195), Expect = 2.960e-15
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   19 WEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKVDPR 279
            WE++ +G +L +       S+ I A+D+DGTLIKTKSG+V F    DDWQ+   +IP  L++   +GYK+ I +NQ G+G  K DP+
Sbjct:  181 WEDVSNGKLLIFTKSGVTASSKIAAYDLDGTLIKTKSGLV-FAKNKDDWQIAFKQIPKHLKELETQGYKLVIFTNQAGIGKGKTDPK 266
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: UPI00059BCDEF (uncharacterized protein F21D5.5 n=1 Tax=Camponotus floridanus TaxID=104421 RepID=UPI00059BCDEF)

HSP 1 Score: 78.6 bits (192), Expect = 7.540e-15
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   16 RWEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKV 270
            +W+ +  G +L + P   +  + I A+DMDGTLIKTKSG+V F    +DWQL    +P+ L++ H  GYK+ I +NQ G+ T K+
Sbjct:  185 KWDSIDHGKLLIYTPSFVQHRSKIAAYDMDGTLIKTKSGLV-FPKNCNDWQLLYPDVPSKLKQLHTNGYKIVIFTNQAGLSTGKI 268
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: A0A833VZ63_9HYME (FHA_2 domain-containing protein n=3 Tax=Meliponini TaxID=83319 RepID=A0A833VZ63_9HYME)

HSP 1 Score: 78.6 bits (192), Expect = 7.550e-15
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   19 WEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKVDPRMVRTWA 297
            WE    G++L          + I A+DMDGTLIKTKSG+V F    DDWQL    +P  LRK H+ GYK+ + +NQ  +G+ KV+P+  +  A
Sbjct:  192 WESKESGALLICTTQGVESRSKIAAYDMDGTLIKTKSGLV-FPKDYDDWQLIYPDVPKKLRKLHNDGYKIVVFTNQKSIGSGKVNPKSFKNKA 283
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: E2AJR5_CAMFO (Probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Camponotus floridanus TaxID=104421 RepID=E2AJR5_CAMFO)

HSP 1 Score: 78.6 bits (192), Expect = 8.050e-15
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   16 RWEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKV 270
            +W+ +  G +L + P   +  + I A+DMDGTLIKTKSG+V F    +DWQL    +P+ L++ H  GYK+ I +NQ G+ T K+
Sbjct:  164 KWDSIDHGKLLIYTPSFVQHRSKIAAYDMDGTLIKTKSGLV-FPKNCNDWQLLYPDVPSKLKQLHTNGYKIVIFTNQAGLSTGKI 247
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: A0A0J7NWF8_LASNI (Bifunctional polynucleotide phosphatase kinase-like protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NWF8_LASNI)

HSP 1 Score: 76.3 bits (186), Expect = 4.760e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   16 RWEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKV 270
            +W+   +G +L +   + +  + I A+DMDGTLIKTKSG+V F    +DWQL    +P  L+++H  GYK+ I +NQ G+ T KV
Sbjct:  156 KWDSFDNGKLLIYTSPLVQHRSKIAAYDMDGTLIKTKSGLV-FPKDCNDWQLLYPDVPGKLKQFHTNGYKIVIFTNQAGLSTGKV 239
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: A0A6J3KVR6_9HYME (uncharacterized protein F21D5.5 isoform X1 n=13 Tax=Bombus TaxID=28641 RepID=A0A6J3KVR6_9HYME)

HSP 1 Score: 76.3 bits (186), Expect = 4.910e-14
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   19 WEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKVDPRMVR 288
            WE    G++L +        + I A+DMDGTLIKTKSG+V F    DDWQL    +P  L K H+ GYK+ I +NQ  +G+ +++P+  +
Sbjct:  216 WESKESGALLIYTTQGVESRSKIAAYDMDGTLIKTKSGLV-FPKDYDDWQLIYPDVPKKLHKLHNDGYKIVIFTNQGSIGSGRINPKFFK 304
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: UPI0010FB8979 (LOW QUALITY PROTEIN: uncharacterized protein F21D5.5 n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB8979)

HSP 1 Score: 75.9 bits (185), Expect = 6.700e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   16 RWEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKV 270
            +W+ + +G +L +   + +  + I A+DMDGTLIKTKSG+V F    +DWQL    +P  L++ H  GYK+ I +NQ G+ T KV
Sbjct:  211 KWDSIGNGKLLIYTSPLVQHRSKIAAYDMDGTLIKTKSGLV-FPKDCNDWQLLYPDVPGQLKQLHTNGYKIVIFTNQAGLSTGKV 294
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BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Match: UPI0014434D02 (uncharacterized protein F21D5.5 isoform X1 n=2 Tax=Megalopta genalis TaxID=115081 RepID=UPI0014434D02)

HSP 1 Score: 75.5 bits (184), Expect = 9.190e-14
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   19 WEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKVDPR 279
            WE   +G++L +     +  + I A+DMDGTLIKT++G+V F    DDWQ+   ++P  L+K H  GYK+ I +NQ G+G+A+++ +
Sbjct:  242 WESKENGALLMYTTHGVKGRSKIAAYDMDGTLIKTRTGLV-FPKDYDDWQIIYSEVPGKLKKLHSDGYKIVIFTNQCGLGSARLNAK 327
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17209.5104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS6_ECTSI2.310e-5092.31Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
UPI000E6E41032.500e-1543.68uncharacterized protein F21D5.5-like n=2 Tax=Cteno... [more]
UPI000E6E51B52.960e-1543.68uncharacterized protein F21D5.5-like n=1 Tax=Cteno... [more]
UPI00059BCDEF7.540e-1542.35uncharacterized protein F21D5.5 n=1 Tax=Camponotus... [more]
A0A833VZ63_9HYME7.550e-1543.01FHA_2 domain-containing protein n=3 Tax=Meliponini... [more]
E2AJR5_CAMFO8.050e-1542.35Probable multidrug resistance-associated protein l... [more]
A0A0J7NWF8_LASNI4.760e-1442.35Bifunctional polynucleotide phosphatase kinase-lik... [more]
A0A6J3KVR6_9HYME4.910e-1441.11uncharacterized protein F21D5.5 isoform X1 n=13 Ta... [more]
UPI0010FB89796.700e-1442.35LOW QUALITY PROTEIN: uncharacterized protein F21D5... [more]
UPI0014434D029.190e-1440.23uncharacterized protein F21D5.5 isoform X1 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17209contigEcto-sp13_S_contig17209:2527..3329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score179.9
Seed ortholog evalue6.1e-43
Seed eggNOG ortholog2880.D7FLS6
Model size306
KEGG koko:K08073
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.DNA-3'-diphospho-5'-guanosine diphosphatase
EggNOG OGsCOG0241@1,KOG2134@2759
EC2.7.1.78,3.1.3.32
Cds size303
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.7436223-UTR-Ecto-sp13_S_contig17209:2526..25291681462899.7436223-UTR-Ecto-sp13_S_contig17209:2526..2529Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17209 2527..2529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.7553837-CDS-Ecto-sp13_S_contig17209:2529..26641681462899.7553837-CDS-Ecto-sp13_S_contig17209:2529..2664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17209 2530..2664 +
1681462899.7643204-CDS-Ecto-sp13_S_contig17209:3161..33291681462899.7643204-CDS-Ecto-sp13_S_contig17209:3161..3329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17209 3162..3329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17209.5104.1prot_Ecto-sp13_S_contig17209.5104.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17209 2530..3329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17209.5104.1

>prot_Ecto-sp13_S_contig17209.5104.1 ID=prot_Ecto-sp13_S_contig17209.5104.1|Name=mRNA_Ecto-sp13_S_contig17209.5104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MNVFRWEELMDGSVLRWVPDISRVSTHIVAFDMDGTLIKTKSGVVRFGDA
ADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTAKVDPRMVRTWAAW
*
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mRNA from alignment at Ecto-sp13_S_contig17209:2527..3329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17209.5104.1 ID=mRNA_Ecto-sp13_S_contig17209.5104.1|Name=mRNA_Ecto-sp13_S_contig17209.5104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17209:2527..3329+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGATGAATGTGTTCAGGTGGGAAGAGCTGATGGACGGATCGGTGCTGCG
GTGGGTGCCCGACATTAGCAGGGTCTCCACCCATATAGTGGCGTTCGACA
TGGACGGGACGCTCATCAAGACCAAGTCAGGTGTGGTTGTTGGCATTGTC
TTCGTCCAAGACACATAGTTGGCTCCCTCTTTGTGACCCTTCAGATTCCA
AACCTCTGTTTCATATTTTCCACGTTTGCTCCTGGTGTGATTTGCTTCCT
TTTTTTTTCTTTGTGCAGCGGTGAGGTGAGGTAGGGTAATAACTGTATCC
CACCAGGAAGACGTGAGCAGCGTCTGCCTTTTCGTCGACGAGTATCGAAC
ACGACACAGGAGGGTTGCGACACGCGCCGATTGACGTATGTCAGTGCACA
CCAAACCTTTGCTCGAGTATCCTCGATTTACTACGCACACAGTGGTCTCG
GTTGACCCCCCTCCCCCCCCCCCCCTTCTCGTTGTCCTACGTAGCCCCCC
TCCTGTCCAGTACCATCCAAGTGCCCCCCTCTCCCCCCCGCCCCCATCCG
CCCGGGGTGGCATCGACCAATCGATCAATCGATCAATCGACTGTTATAAT
CGACCAATCGACCAATCGACCCATCGACAGGGAAGCGTTTCGGAGATGCT
GCGGACGACTGGCAGCTTTGGAACGGCAAGATCCCGACAGTGCTGCGAAA
ATGGCACGACCGAGGGTACAAGGTGGCCATAATCTCCAACCAGATGGGCG
TCGGCACGGCAAAGGTGGATCCGCGAATGGTACGTACGTGGGCAGCGTGG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17209:2527..3329+

>mRNA_Ecto-sp13_S_contig17209.5104.1 ID=mRNA_Ecto-sp13_S_contig17209.5104.1|Name=mRNA_Ecto-sp13_S_contig17209.5104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17209:2527..3329+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGTGTTCAGGTGGGAAGAGCTGATGGACGGATCGGTGCTGCGGTG
GGTGCCCGACATTAGCAGGGTCTCCACCCATATAGTGGCGTTCGACATGG
ACGGGACGCTCATCAAGACCAAGTCAGGTGTGGTTCGTTTCGGAGATGCT
GCGGACGACTGGCAGCTTTGGAACGGCAAGATCCCGACAGTGCTGCGAAA
ATGGCACGACCGAGGGTACAAGGTGGCCATAATCTCCAACCAGATGGGCG
TCGGCACGGCAAAGGTGGATCCGCGAATGGTACGTACGTGGGCAGCGTGG
TGA
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