mRNA_Ecto-sp13_S_contig17152.5076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17152.5076.1
Unique NamemRNA_Ecto-sp13_S_contig17152.5076.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A835ZHT4_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHT4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.590e-18
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    7 ARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLIVRYFHVGVL 153
            ARSKHCRVCN CV RFDHHC WLNQCVGE NYR FLLFL+    HV +L
Sbjct:  162 ARSKHCRVCNRCVSRFDHHCGWLNQCVGERNYRFFLLFLVT---HVAML 207          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A7S0DZX3_9EUKA (Palmitoyltransferase (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DZX3_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 1.680e-18
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLI 126
            RPARSKHC +CN CV RFDHHC WLN CVGE NYR FLLFL+
Sbjct:   33 RPARSKHCVICNKCVSRFDHHCPWLNTCVGERNYRYFLLFLL 74          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A6T0DJF2_CHRCT (Palmitoyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0DJF2_CHRCT)

HSP 1 Score: 85.1 bits (209), Expect = 3.770e-18
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    1 RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLI 126
            RPARSKHC +CN CV RFDHHC WLN CVGE NYR+FLLFLI
Sbjct:  160 RPARSKHCVICNKCVARFDHHCPWLNSCVGERNYRLFLLFLI 201          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A0P7X2B4_SCLFO (Palmitoyltransferase n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7X2B4_SCLFO)

HSP 1 Score: 82.0 bits (201), Expect = 3.710e-17
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLIVRYFHVG 147
            +PARSKHCRVCN CV RFDHHC W+N C+G +NYR FLL+L++     G
Sbjct:  162 KPARSKHCRVCNRCVQRFDHHCVWVNNCIGAQNYRYFLLYLLLTCAMAG 210          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: T0QRX9_SAPDV (Palmitoyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QRX9_SAPDV)

HSP 1 Score: 82.0 bits (201), Expect = 3.770e-17
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    7 ARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLIVR 132
            ARSKHC VCNVCVPRFDHHC WLN CVGE NY+ FL F+I  
Sbjct:  169 ARSKHCTVCNVCVPRFDHHCGWLNACVGERNYKSFLAFIITN 210          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A7S3XCZ7_9CHLO (S-acyltransferase n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XCZ7_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 6.850e-17
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFL 123
            +PARSKHCRVCN CV RFDHHC WLN CVGE N R FLLFL
Sbjct:  120 KPARSKHCRVCNRCVARFDHHCVWLNSCVGERNMRWFLLFL 160          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A0M0JA21_9EUKA (Palmitoyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JA21_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 7.340e-17
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLI 126
            RPARSKHC +CN CV RFDHHC WLN CVGE NYR F+LFL+
Sbjct:  166 RPARSKHCVICNKCVARFDHHCPWLNSCVGERNYRWFMLFLL 207          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A086L1M4_TOXGO (Palmitoyltransferase n=2 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A086L1M4_TOXGO)

HSP 1 Score: 79.3 bits (194), Expect = 1.500e-16
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLIVRY 135
            +PARSKHCR+CNVCV RFDHHC W+  CVG  N+ +F++FLI  +
Sbjct:  167 KPARSKHCRLCNVCVARFDHHCVWIGNCVGARNHGVFIIFLITHF 211          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A8K1FDC9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDC9_PYTOL)

HSP 1 Score: 79.7 bits (195), Expect = 1.680e-16
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    7 ARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLIVR 132
            ARSKHC +CN+CVPRFDHHC WLN C+GEEN+  FL FL++ 
Sbjct:  116 ARSKHCSICNICVPRFDHHCVWLNSCIGEENHLSFLRFLLMN 157          
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Match: A0A443NDK7_9MAGN (S-acyltransferase n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NDK7_9MAGN)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-16
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLIVRYF 138
            RPARSKHCRVC+ CV RFDHHC W+N C+GE+N R F+ FL+  +F
Sbjct:  169 RPARSKHCRVCDRCVARFDHHCGWMNNCIGEKNTRYFMAFLLWHFF 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17152.5076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHT4_9STRA1.590e-1875.51Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S0DZX3_9EUKA1.680e-1878.57Palmitoyltransferase (Fragment) n=1 Tax=Phaeocysti... [more]
A0A6T0DJF2_CHRCT3.770e-1880.95Palmitoyltransferase n=1 Tax=Chrysotila carterae T... [more]
A0A0P7X2B4_SCLFO3.710e-1763.27Palmitoyltransferase n=2 Tax=Scleropages formosus ... [more]
T0QRX9_SAPDV3.770e-1776.19Palmitoyltransferase n=2 Tax=Saprolegnia TaxID=476... [more]
A0A7S3XCZ7_9CHLO6.850e-1780.49S-acyltransferase n=1 Tax=Picocystis salinarum Tax... [more]
A0A0M0JA21_9EUKA7.340e-1776.19Palmitoyltransferase n=1 Tax=Chrysochromulina tobi... [more]
A0A086L1M4_TOXGO1.500e-1662.22Palmitoyltransferase n=2 Tax=Toxoplasma gondii Tax... [more]
A0A8K1FDC9_PYTOL1.680e-1669.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A443NDK7_9MAGN1.770e-1665.22S-acyltransferase n=1 Tax=Cinnamomum micranthum f.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17152contigEcto-sp13_S_contig17152:468..629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score82.0
Seed ortholog evalue9.2e-14
Seed eggNOG ortholog112098.XP_008605738.1
Preferred nameZDHHC4
Model size162
KEGG koko:K18932,ko:K20003
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons1
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1312@2759
EC2.3.1.225
Cds size162
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.450951-CDS-Ecto-sp13_S_contig17152:467..6291681462897.450951-CDS-Ecto-sp13_S_contig17152:467..629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17152 468..629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17152.5076.1prot_Ecto-sp13_S_contig17152.5076.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17152 468..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17152.5076.1

>prot_Ecto-sp13_S_contig17152.5076.1 ID=prot_Ecto-sp13_S_contig17152.5076.1|Name=mRNA_Ecto-sp13_S_contig17152.5076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
RPARSKHCRVCNVCVPRFDHHCAWLNQCVGEENYRIFLLFLIVRYFHVGV
LGS*
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mRNA from alignment at Ecto-sp13_S_contig17152:468..629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17152.5076.1 ID=mRNA_Ecto-sp13_S_contig17152.5076.1|Name=mRNA_Ecto-sp13_S_contig17152.5076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17152:468..629- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGGCGCGATCCAAGCACTGCCGGGTGTGTAACGTTTGTGTCCCTCG CTTCGACCACCACTGCGCGTGGCTCAACCAGTGCGTGGGGGAGGAGAACT ACCGCATCTTCCTGTTATTCCTGATCGTGAGATATTTCCATGTAGGAGTA TTAGGTAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17152:468..629-

>mRNA_Ecto-sp13_S_contig17152.5076.1 ID=mRNA_Ecto-sp13_S_contig17152.5076.1|Name=mRNA_Ecto-sp13_S_contig17152.5076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17152:468..629- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGGCGCGATCCAAGCACTGCCGGGTGTGTAACGTTTGTGTCCCTCG
CTTCGACCACCACTGCGCGTGGCTCAACCAGTGCGTGGGGGAGGAGAACT
ACCGCATCTTCCTGTTATTCCTGATCGTGAGATATTTCCATGTAGGAGTA
TTAGGTAGTTAG
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