mRNA_Ecto-sp13_S_contig1715.5072.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1715.5072.1
Unique NamemRNA_Ecto-sp13_S_contig1715.5072.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1715.5072.1 vs. uniprot
Match: D8LN06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN06_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.460e-93
Identity = 224/253 (88.54%), Postives = 233/253 (92.09%), Query Frame = 1 
Query:    1 MRLAALAVLEESSEDNQEPANNANGVVGANESGEETESDGPEATAARRGDDAXXXXXXXGTEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAGGEWVCPRCVTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPRRAWSASMEALLATAVEKIGAGKWKEMEEDPDFDFEGMPANALKQKWRTLSQKRRN 759
            MRLAALAVLEESSEDN+EPANNANGVV ANESGEETESDGPEATA       XXXXXXX TEEEEEEDICLVCCEVRDPDRILRCS+CSGGGSGMGIYHNECLPKPL+SMPA GEWVCPRCVTKKR        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PRRAWS+SMEALLATAV+K+GAGKWKEMEEDP+FDFEGMPANAL+QKWRTLSQKRR+
Sbjct:    1 MRLAALAVLEESSEDNEEPANNANGVVDANESGEETESDGPEATAXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHGGPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PRRAWSSSMEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANALRQKWRTLSQKRRS 252
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BLAST of mRNA_Ecto-sp13_S_contig1715.5072.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 4.770e-66
Identity = 210/261 (80.46%), Postives = 213/261 (81.61%), Query Frame = 1 
Query:    1 MRLAALAVLEESSEDNQEPANNANGVVGANESGEETESDGPEATAARRGDDAXXXXXXXGTEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAGGEWVCPRCVTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------KKPRRAWSASMEALLATAVEKIGAGKWKEMEEDPDFDFEGMPANALKQKWRTLSQKRRN 759
            MRLAAL             ANNANGVVGAN                      XXXXXXX TEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPA GEWVCPRCVTKKR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        KKPRRAWSASMEALLATAV+K+GAGKWKEMEEDP+FDFEGMPANALKQKWRTLSQKRRN
Sbjct: 1267 MRLAALXXXXXXXXXXXXLANNANGVVGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPRRAWSASMEALLATAVKKVGAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQKRRN 1527
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1715.5072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN06_ECTSI1.460e-9388.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU5_9PHAE4.770e-6680.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1715contigEcto-sp13_S_contig1715:9415..12370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size762
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPHD-type zinc finger and SANT/Myb domain protein
Ec32 orthologEc-27_000910.1
Cds size762
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.2074564-CDS-Ecto-sp13_S_contig1715:9414..95311681462897.2074564-CDS-Ecto-sp13_S_contig1715:9414..9531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 9415..9531 -
1681462897.2189918-CDS-Ecto-sp13_S_contig1715:9853..101531681462897.2189918-CDS-Ecto-sp13_S_contig1715:9853..10153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 9854..10153 -
1681462897.22883-CDS-Ecto-sp13_S_contig1715:10782..109591681462897.22883-CDS-Ecto-sp13_S_contig1715:10782..10959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 10783..10959 -
1681462897.2383595-CDS-Ecto-sp13_S_contig1715:11818..119381681462897.2383595-CDS-Ecto-sp13_S_contig1715:11818..11938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 11819..11938 -
1681462897.247916-CDS-Ecto-sp13_S_contig1715:12322..123701681462897.247916-CDS-Ecto-sp13_S_contig1715:12322..12370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 12323..12370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1715.5072.1prot_Ecto-sp13_S_contig1715.5072.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1715 9415..12370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1715.5072.1

>prot_Ecto-sp13_S_contig1715.5072.1 ID=prot_Ecto-sp13_S_contig1715.5072.1|Name=mRNA_Ecto-sp13_S_contig1715.5072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MRLAALAVLEESSEDNQEPANNANGVVGANESGEETESDGPEATAARRGD
DAGSDAEADGTEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHN
ECLPKPLDSMPAGGEWVCPRCVTKKRKQGGSGAGGSKSTAGKNKGGGKDG
GSTKAAAAAAASKKRKVPSREDAGGGGGGGGGGADGGREEGGGTKKPRRA
WSASMEALLATAVEKIGAGKWKEMEEDPDFDFEGMPANALKQKWRTLSQK
RRN*
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mRNA from alignment at Ecto-sp13_S_contig1715:9415..12370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1715.5072.1 ID=mRNA_Ecto-sp13_S_contig1715.5072.1|Name=mRNA_Ecto-sp13_S_contig1715.5072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:9415..12370- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCTTGCGGCTTTAGCGGTGCTGGAGGAGTCTTCTGAGGACAACGT
GAGAGGGCCGGAGGGAGAAAGAGATACAGAGACAGAGATAGGCAGAGAGG
CAGACTCAGGCAAAGTCTCACGGAGAGACAGAGACACAGACACAGACATG
GCAGGCAGAGACTCGGACACAAAAACTGCCAAAGGCACGCCGCCGTACCG
CCTACCACATCTTCCCTTGCTTCAACTTTTTGCGCCACCGGACGACTGTG
TGTATGTGTGTGTTTGTTTTCCTGCTGTTGCTCTATGCTGCTCCAGCTTT
CTGACGTCACCAGGCGTCTGACTGGCTGTTCTTTTGGTGCTGTTGATCCT
CTGCTTTTCCGACTGTTGGACGCCACTGAACCGACGACTGCCTGTTTCGT
TGCTCCTCTGCCGAACGGGACGTGGACTGTAGCAGGAACCGGCTAACAAC
GCCAACGGTGTGGTGGGCGCGAACGAGTCGGGAGAAGAGACAGAGTCGGA
CGGCCCCGAGGCCACGGCTGCCCGGCGTGGCGATGATGCCGGCTCTGATG
CGGTGAGTGAGGGAGAAGTGAGGCTTGGTAGGGGAGCCGCTGCCGCTGTT
GCAGCGAACCTCTCCTCCGCGTTCTCCTGCTGGTGGTTGTTGTGTGTTCC
CTCGCTAATCTTGTTGGGCGGTTTTTCCCGGAGTTTTTGTTGTGGACGGG
TGTTGCTGTCGAGGACCGGTAACAAGGAATCCCCGGCGGCAGCTGTTCCT
TTTCGTCCACGTTCGCCTGCGTCTCCCTCTCTCCCTTCCCCTCTCTTGAC
ATGTTTCGTGACAAGGGCTTTGTTTCCAGCCTCACGCGCTGTCAGGATAT
ATGACACTGCCGCCCCTGCTCTGGAGATTGTTGCCGCTGCTGTGTGGTTG
TTTTTGTTTCGTTATGCTGTTGTTGTTGTTGTTGTTGCCGTCGTCGTCGT
GTAGACACTGTTGAACTTGCTGTCGCTTTCGTTGGTCGTGGAGGTCGTGG
TGCTATCGTCACGACGATAAACTTTGATCTATTTCCGACCGGTTCCTCCT
CTTCCGTTCTCTGTCAGTGTTTTCGAGACGCGAAGAAATGAGTTTCCTTG
GTCACCAGCCAACCTTCAACAGTAGTTTAGCATGAAGACAGGAGAGGCAC
AACGGAAGGGGAAACCCGCTGCTTGCGAAACACACCTACAGCGCAGCAAC
AGAACAAAAAACAAGGGGTTTTAGAAAATCACCGAAAAGGACGAGGAGAC
CATCGCTCCAAACCCACCAGCCTAGGGAACAACGCCGACTCGCGATTATT
ATATCGCTCGGTTTTCTGCACTGTCCATTCCATCAGCCAGCACTCAAGAC
TGATTATCTTGTCCTCCTTACTACGGCTGCGTTATGTGTTTTGTGCTACC
GCATCCCACAGGAGGCGGACGGGACAGAAGAAGAGGAGGAAGAGGATATC
TGCCTCGTTTGCTGCGAGGTGCGCGATCCGGACAGGATCCTCCGGTGCTC
CAGTTGCTCCGGGGGGGGCAGTGGCATGGGGATATACCACAACGAGTGCC
TCCCGAAGCCCCTGGACTCCATGCCCGCCGGGGGCGAGGTGAGCGAATGG
TTCGGTTGTGTTTTCCTCATTTGTATTGTTGTCTTTTGCTTCTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTGGTCGTTGT
GGTTGTTTCCCATTTCGTGATCAAGCGAAACGGCTGAGAGGGGGCCATCG
TGCGTCATTGTGATTATCCCGATCGGCAACTCGTTCGTAGAAGTATCTCT
TTCGTCTCTCTGGGGTCGGCTGCTGAAGACTCAATCGTTATGGGCAACAT
TTCCTTGACCCCCCCGCCCTCTCGTTCTCTTCACCGTACGAAGCGTATTT
GGCCATCCATACTAAAGCTGCTGGTTGTGCGTTTCGCTTTATTTTTATTT
TTCAACGATCGGCTTGTCGGTGTCTGAACGATACCACAGCAATCTTCCAC
ATCTCTTCTCCCACCCCTTTCTTTCAACTGTTGTTCCGTTCACGGAAGAA
AACAACGACATTACTACGGCACCACCTTTTGTTTGTGCTTTGAATTGCCT
GGAACCGTAGAGCTCCTAGGTTGTCTCGCAATGTCTCACCCCATAGCCGA
ACCTGAACCCCGCCCCCCCCCCCCTCCCGATCTCCCTCCCGCTTTCCTCA
CGGAACGGTATACTCAGTGGGTGTGCCCCCGCTGTGTCACCAAGAAACGA
AAACAAGGGGGTTCCGGCGCAGGAGGCTCCAAGTCCACAGCGGGCAAGAA
TAAGGGCGGCGGCAAGGACGGTGGAAGCACCAAGGCCGCCGCCGCAGCAG
CAGCATCAAAAAAGCGGAAGGTTCCCTCTCGCGAGGATGCTGGTGGCGGT
GGCGGTGGCGGTGGCGGTGGTGCGGACGGGGGCAGGGAAGAGGGGGGCGG
GACGAAGAAACCAAGGCGAGCGTGGTCGGCGAGTATGGAGGCTCTGCTCG
CCACCGCGGTCGAGAAGGTGCAGTACTCGCTGCCTCCGGAAGGCGCCATT
CCTTGTTTGCGAGACCATACGTTGAAAAGAACAGAACACCCTGTGGAGCG
AAGCGTGAACATGCAACGTACATGCCCCCAAATAATTATGGAGAGTTTTA
TGCTTTTCGTGTGCTGCCTCTTCATTTTGTTCTCACAAAACAATCGCTTG
ATGTTTTTGAAGAAAAGCTCCTTTTCTTATGCGCCATGTTCAGCAACTCA
TCTCTTGCTTGTAAGATATAAAACACTTTTTCTTTTGTGCCAGCTTCAAC
GCTTTCCTTCGTCTGGGCATTTTTTTTTCTCGTAAGCAGATAGGCGCTGG
CAAGTGGAAGGAGATGGAGGAGGACCCCGATTTCGACTTCGAGGGCATGC
CGGCAAACGCTCTCAAACAAAAATGGAGGACTCTCTCGCAGAAGCGGCGC
AACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1715:9415..12370-

>mRNA_Ecto-sp13_S_contig1715.5072.1 ID=mRNA_Ecto-sp13_S_contig1715.5072.1|Name=mRNA_Ecto-sp13_S_contig1715.5072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:9415..12370- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCTTGCGGCTTTAGCGGTGCTGGAGGAGTCTTCTGAGGACAACCA
GGAACCGGCTAACAACGCCAACGGTGTGGTGGGCGCGAACGAGTCGGGAG
AAGAGACAGAGTCGGACGGCCCCGAGGCCACGGCTGCCCGGCGTGGCGAT
GATGCCGGCTCTGATGCGGAGGCGGACGGGACAGAAGAAGAGGAGGAAGA
GGATATCTGCCTCGTTTGCTGCGAGGTGCGCGATCCGGACAGGATCCTCC
GGTGCTCCAGTTGCTCCGGGGGGGGCAGTGGCATGGGGATATACCACAAC
GAGTGCCTCCCGAAGCCCCTGGACTCCATGCCCGCCGGGGGCGAGTGGGT
GTGCCCCCGCTGTGTCACCAAGAAACGAAAACAAGGGGGTTCCGGCGCAG
GAGGCTCCAAGTCCACAGCGGGCAAGAATAAGGGCGGCGGCAAGGACGGT
GGAAGCACCAAGGCCGCCGCCGCAGCAGCAGCATCAAAAAAGCGGAAGGT
TCCCTCTCGCGAGGATGCTGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTG
CGGACGGGGGCAGGGAAGAGGGGGGCGGGACGAAGAAACCAAGGCGAGCG
TGGTCGGCGAGTATGGAGGCTCTGCTCGCCACCGCGGTCGAGAAGATAGG
CGCTGGCAAGTGGAAGGAGATGGAGGAGGACCCCGATTTCGACTTCGAGG
GCATGCCGGCAAACGCTCTCAAACAAAAATGGAGGACTCTCTCGCAGAAG
CGGCGCAACTGA
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