mRNA_Ecto-sp13_S_contig17063.5026.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17063.5026.1
Unique NamemRNA_Ecto-sp13_S_contig17063.5026.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.200e-20
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            VTGLDAFVTSV WFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV
Sbjct:   49 VTGLDAFVTSVDWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 95
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: A0A2P4Y101_9STRA (Intraflagellar Transport protein 80 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y101_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.490e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            VT +DAFVTSV W PS G +S+D FA +C+DGT RLI+++GREEK+V
Sbjct:   50 VTKMDAFVTSVHWVPSVGKQSADTFAVSCTDGTFRLISKSGREEKRV 96
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: F0WV09_9STRA (KIAA1374 protein putative n=3 Tax=Albugo TaxID=65356 RepID=F0WV09_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.580e-11
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            +T +DA+VTS+ W PS G +++D FA AC+DGT RLIT++GREEK+V
Sbjct:   50 ITTIDAYVTSIDWIPSIGKQAADTFAVACTDGTFRLITKSGREEKRV 96
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: A0A8K1CRT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRT4_PYTOL)

HSP 1 Score: 63.2 bits (152), Expect = 2.340e-10
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            V  +DAFVT+V W PS G +++D FA AC+DGT RLI++ GREEKKV
Sbjct:   50 VATMDAFVTAVDWVPSVGKQAADTFAVACTDGTFRLISKTGREEKKV 96
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: A0A425DMH1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DMH1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.190e-10
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            VT +D FVTSV W PS G +S+D+F  AC+DGT R++++ GREEKKV
Sbjct:   50 VTSVDTFVTSVDWVPSVGKQSADMFVIACTDGTFRIMSKNGREEKKV 96
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: H3GA28_PHYRM (Uncharacterized protein n=27 Tax=Peronosporaceae TaxID=4777 RepID=H3GA28_PHYRM)

HSP 1 Score: 60.8 bits (146), Expect = 1.530e-9
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            V  +DA+VTSV W PS G +S+D FA +C+DGT RLI++ GREEK+V
Sbjct:   50 VAKMDAYVTSVHWVPSVGKQSADTFAVSCTDGTFRLISKNGREEKRV 96
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: A0A6A5AC88_9STRA (ANAPC4_WD40 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AC88_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.480e-9
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            VT +D FVTSV W PS G +S+D+F  A +DGT R++++ GREEKKV
Sbjct:   50 VTSVDTFVTSVDWVPSVGKQSADMFVIASTDGTFRIMSKNGREEKKV 96
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: K3WVM6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM6_GLOUD)

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-9
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            V  ++AFVT++ W PS G +++D FA +C+DGT RL+++ GREEKKV
Sbjct:   50 VASMEAFVTTIDWVPSVGKQAADTFAVSCTDGTFRLMSKTGREEKKV 96
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: A0A418AXT2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A418AXT2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.320e-9
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            V  +D FVTSV W PS G + +D+F  AC+DGT R++++ GREEKKV
Sbjct:   68 VASVDTFVTSVDWVPSVGKQGADMFVIACTDGTFRIMSKNGREEKKV 114
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BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Match: A0A2D4BWK4_PYTIN (Intraflagellar Transport protein 80 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWK4_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 1.870e-8
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKV 141
            V   DAFVT+V W PS G +++D F  +C+DGT RL+++ GREEKKV
Sbjct:  106 VATTDAFVTAVDWVPSVGKQAADTFVISCTDGTFRLVSKNGREEKKV 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17063.5026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC7_ECTSI2.200e-2097.87Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
A0A2P4Y101_9STRA3.490e-1163.83Intraflagellar Transport protein 80 (Fragment) n=1... [more]
F0WV09_9STRA3.580e-1159.57KIAA1374 protein putative n=3 Tax=Albugo TaxID=653... [more]
A0A8K1CRT4_PYTOL2.340e-1061.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A425DMH1_9STRA3.190e-1059.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
H3GA28_PHYRM1.530e-959.57Uncharacterized protein n=27 Tax=Peronosporaceae T... [more]
A0A6A5AC88_9STRA2.480e-957.45ANAPC4_WD40 domain-containing protein n=1 Tax=Apha... [more]
K3WVM6_GLOUD3.900e-953.19Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A418AXT2_9STRA5.320e-955.32Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A2D4BWK4_PYTIN1.870e-855.32Intraflagellar Transport protein 80 n=1 Tax=Pythiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17063contigEcto-sp13_S_contig17063:3445..3591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score94.0
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D8LIC7
Preferred nameIFT80
Model size147
KEGG koko:K19678
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
Exons1
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
Cds size147
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.6296716-CDS-Ecto-sp13_S_contig17063:3444..35911681462893.6296716-CDS-Ecto-sp13_S_contig17063:3444..3591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17063 3445..3591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17063.5026.1prot_Ecto-sp13_S_contig17063.5026.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17063 3445..3591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17063.5026.1

>prot_Ecto-sp13_S_contig17063.5026.1 ID=prot_Ecto-sp13_S_contig17063.5026.1|Name=mRNA_Ecto-sp13_S_contig17063.5026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
VTGLDAFVTSVSWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKVR*
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mRNA from alignment at Ecto-sp13_S_contig17063:3445..3591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17063.5026.1 ID=mRNA_Ecto-sp13_S_contig17063.5026.1|Name=mRNA_Ecto-sp13_S_contig17063.5026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17063:3445..3591+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTACGGGGCTGGATGCCTTCGTGACATCTGTTAGCTGGTTTCCGAGCTC
CGGGGCGCGGTCGTCGGACTTGTTCGCCGCGGCGTGCTCGGACGGGACCG
TACGGCTCATCACCCGGGCAGGGAGGGAAGAGAAAAAGGTGCGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17063:3445..3591+

>mRNA_Ecto-sp13_S_contig17063.5026.1 ID=mRNA_Ecto-sp13_S_contig17063.5026.1|Name=mRNA_Ecto-sp13_S_contig17063.5026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17063:3445..3591+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTACGGGGCTGGATGCCTTCGTGACATCTGTTAGCTGGTTTCCGAGCTC
CGGGGCGCGGTCGTCGGACTTGTTCGCCGCGGCGTGCTCGGACGGGACCG
TACGGCTCATCACCCGGGCAGGGAGGGAAGAGAAAAAGGTGCGCTAA
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