mRNA_Ecto-sp13_S_contig1706.5021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1706.5021.1
Unique NamemRNA_Ecto-sp13_S_contig1706.5021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1706.5021.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 6.200e-50
Identity = 83/114 (72.81%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:  271 PTASCNTSVHAPDATPTFFLKENIREDRAYYPACRNLSAGICA*TDLLIKYP*KVCWLYASGFEVGEVVWAYTIPDVERSACCINWCLNAEACIVLKEDGVPVSVRLAGEDDVS 612
            P   CNT++         FLKENIR+DRA YPACRN +AG CA T LLIKYP KVCWL AS FEVGEVVWA+TIPDVER AC INWCLNAEACIVLK DGVPV+VRLAGEDD +
Sbjct:   67 PRTGCNTNL---------FLKENIRKDRADYPACRNFNAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAHTIPDVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDAN 171
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BLAST of mRNA_Ecto-sp13_S_contig1706.5021.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.380e-43
Identity = 100/230 (43.48%), Postives = 120/230 (52.17%), Query Frame = 1 
Query:    1 MALLPSTPSTPPLITNHSSHRQSSLNPINTVHPCLAKATKSPAPLPSHRPPPLDPLRRLLLWLLLPRRPRAEPAHLRVL-------VHLPARPSKSHPTASC----------NTSVHAPDATPTFFL-----KENIREDRAYYPACRNLSAGICA*TDLLIKYP*KVCWLYASGFEVGEVVWAYTIPDVERSACCINWCLNAEACIVLKEDGVPVSVRLAGEDDVSFLFL 624
            MALLPSTPSTPPL +  ++H   + + +      L+   K+P    S +PP L             RR +    H R+L          PA   +S     C            +    D  P +         N+ +DRA YPACR  S G C  T LLIKYP  VCWL AS FEVGEVVWAYTIPDVER AC I WCLN +A I+LKE+GVPV+ RLAGEDDV   FL
Sbjct:    1 MALLPSTPSTPPLSSQSTAHTARAASTL-----FLSLGQKTPYIHASPKPPSLQ------------RRYQRIVLHRRILSAGCFSGCFYPAARERSRLICECWLICCCHRRRRLARAKADREPQYLCPGTGCNTNLHKDRADYPACRTFSVGTCVWTGLLIKYPGNVCWLCASEFEVGEVVWAYTIPDVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDVLVQFL 213
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BLAST of mRNA_Ecto-sp13_S_contig1706.5021.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.970e-37
Identity = 73/116 (62.93%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:  271 PTASCNTSVHAPDATPTFFLKENIREDRAYYPACRNLSAGICA*TD--LLIKYP*KVCWLYASGFEVGEVVWAYTIPDVERSACCINWCLNAEACIVLKEDGVPVSVRLAGEDDVS 612
            P   CNT++         FLKENI +DRA Y  C    AG  A     LLIKYP KVCWL AS FEVGEVVWAYT PDVER AC INWCLN +ACI+LKE+G PV+VRLAGEDDV+
Sbjct:   69 PGTGCNTNL---------FLKENIHKDRADY--CTT-PAGTLAPVPARLLIKYPGKVCWLCASEFEVGEVVWAYTTPDVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVA 172
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BLAST of mRNA_Ecto-sp13_S_contig1706.5021.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.690e-5
Identity = 52/149 (34.90%), Postives = 62/149 (41.61%), Query Frame = 1 
Query:    1 MALLPSTPSTPPL---ITNHSSHRQSSLNPINTVHPCLAKATKSPAPLPSHRPPPLDPLRRLL----------------LWLLLPRRPRAEPAHLRVLVHLPARPSKSH--PTASCNTSVHAPDATPTFFLKENIREDRAYYPACRNLS 384
            MALLPSTPSTPPL   IT H++   S     NTVHPCLAKA K    +  HR        R+L                                     +PA     +  P   CNT++         FLKENI + RA YPACR L+
Sbjct:    1 MALLPSTPSTPPLSSQITTHTARAAS-----NTVHPCLAKAAKRYQHIVLHR--------RILSAGCFSAASTXXXXXXXXXXXXXXXXXXXXXXGSAEQVPADRESQYLCPGTGCNTNL---------FLKENIHKGRADYPACRTLA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1706.5021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE6.200e-5072.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKW7_ECTSI1.380e-4343.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LET1_ECTSI1.970e-3762.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI2.690e-534.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1706contigEcto-sp13_S_contig1706:9419..10571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size624
Hectar predicted targeting categoryother localisation
Exons2
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.372665-UTR-Ecto-sp13_S_contig1706:9418..95161681462893.372665-UTR-Ecto-sp13_S_contig1706:9418..9516Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1706 9419..9516 +
1681462893.403031-UTR-Ecto-sp13_S_contig1706:10471..105711681462893.403031-UTR-Ecto-sp13_S_contig1706:10471..10571Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1706 10472..10571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.381647-CDS-Ecto-sp13_S_contig1706:9516..99141681462893.381647-CDS-Ecto-sp13_S_contig1706:9516..9914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1706 9517..9914 +
1681462893.3933625-CDS-Ecto-sp13_S_contig1706:10443..104711681462893.3933625-CDS-Ecto-sp13_S_contig1706:10443..10471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1706 10444..10471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1706.5021.1prot_Ecto-sp13_S_contig1706.5021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1706 9517..10471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1706.5021.1

>prot_Ecto-sp13_S_contig1706.5021.1 ID=prot_Ecto-sp13_S_contig1706.5021.1|Name=mRNA_Ecto-sp13_S_contig1706.5021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MPRQSHQVSSPATIASSSTAGSSPPAASMAASTPPPARGAGSSASAGSSA
GSPEQVPPDRELQYLCPRTGCNTNLLLKGKYPRRQGLLPRLQELERRHLR
VNRPVDQVPLKGLLALRLRVRGRRSGVGIHHPRRGTLGVLY*
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mRNA from alignment at Ecto-sp13_S_contig1706:9419..10571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1706.5021.1 ID=mRNA_Ecto-sp13_S_contig1706.5021.1|Name=mRNA_Ecto-sp13_S_contig1706.5021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1706:9419..10571+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTCCTCCCATCTACTCCTTCTACACCCCCTCTCATCACAAATCA
CAGCTCACACCGCCAGAGCAGCCTTAACCCAATAAATACCGTACATCCAT
GCCTCGCCAAAGCCACCAAGTCTCCAGCCCCGCTACCATCGCATCGTCCT
CCACCGCTGGATCCTCTCCGCCGGCTGCTTCTATGGCTGCTTCTACCCCG
CCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGTTCATCTGCCGG
CTCGCCCGAGCAAGTCCCACCCGACCGCGAGCTGCAATACCTCTGTCCAC
GCACCGGATGCAACACCAACCTTCTTCTTAAAGGAAAATATCCGCGAAGA
CAGGGCCTACTACCCCGCCTGCAGGAACTTGAGCGCCGGCATCTGCGCGT
GAACCGACCTGTTGATCAAGTACCCCTGAAAGGTCTGCTGGCTCTACGCC
TCCGGGTTCGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAGGTGA
GAGCTTTCGTATATCTACAGCAGCAGTATTGAATGATCTTCCTTCACGGA
TGTAATCTGCGGCAGCACTGCGGCAGCAGGCTTAGAGTTCGCGCGTTCAA
ATTCGTGGTTATTTGTGGGTATGAACGCGATTTATATTGTTTGCCGACGC
ACACCATTCATATCAAATTGTTTTCGCCACACAACATTCAGCGCTCTCAT
CATTTTTCGGCGCTCTTCGTGATGGGGTATGATTCATATGCCCACGTTGT
AGGAAATAACACGATTCATTCCTGATTTCTGTCACAAGAAAACCACACAA
CAACCACCAAGCAACCTTGCAACATTTTTTGTGTTGTGCTGGGTAAGGTT
GTCGCACAAACTTTTGCCCCTCCCTGCGCTGTTGAATTACTCAGAAATTA
ACAGATCTACTTCAACAAAACGCTGCAAAAAAAAAGTTCTTCACTGACGA
GGTTTCCGCCTCCATGTATGTATGTATGTATGTATGTATATATGTGTATA
TCCTTCACTTTTTGTGATCAAACAGACGTGGAACGCTCGGCGTGCTGTAT
TAACTGGTGCCTCAACGCCGAGGCCTGCATCGTCCTCAAGGAGGATGGCG
TCCCCGTCAGTGTTAGGCTGGCCGGCGAGGACGACGTGAGTTTCTTATTT
CTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1706:9419..10571+

>mRNA_Ecto-sp13_S_contig1706.5021.1 ID=mRNA_Ecto-sp13_S_contig1706.5021.1|Name=mRNA_Ecto-sp13_S_contig1706.5021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1706:9419..10571+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGCCAAAGCCACCAAGTCTCCAGCCCCGCTACCATCGCATCGTC
CTCCACCGCTGGATCCTCTCCGCCGGCTGCTTCTATGGCTGCTTCTACCC
CGCCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGTTCATCTGCC
GGCTCGCCCGAGCAAGTCCCACCCGACCGCGAGCTGCAATACCTCTGTCC
ACGCACCGGATGCAACACCAACCTTCTTCTTAAAGGAAAATATCCGCGAA
GACAGGGCCTACTACCCCGCCTGCAGGAACTTGAGCGCCGGCATCTGCGC
GTGAACCGACCTGTTGATCAAGTACCCCTGAAAGGTCTGCTGGCTCTACG
CCTCCGGGTTCGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAGAC
GTGGAACGCTCGGCGTGCTGTATTAA
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