mRNA_Ecto-sp13_S_contig17023.5007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17023.5007.1
Unique NamemRNA_Ecto-sp13_S_contig17023.5007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17023.5007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17023contigEcto-sp13_S_contig17023:1174..2964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size106
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.379882-CDS-Ecto-sp13_S_contig17023:1173..11891681462892.379882-CDS-Ecto-sp13_S_contig17023:1173..1189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17023 1174..1189 +
1681462892.3898926-CDS-Ecto-sp13_S_contig17023:2876..29621681462892.3898926-CDS-Ecto-sp13_S_contig17023:2876..2962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17023 2877..2962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17023.5007.1prot_Ecto-sp13_S_contig17023.5007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17023 1174..2962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17023.5007.1

>prot_Ecto-sp13_S_contig17023.5007.1 ID=prot_Ecto-sp13_S_contig17023.5007.1|Name=mRNA_Ecto-sp13_S_contig17023.5007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
VPFVEGARLGLPSEQLRLALGAHFLGVSCLSCHA
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mRNA from alignment at Ecto-sp13_S_contig17023:1174..2964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17023.5007.1 ID=mRNA_Ecto-sp13_S_contig17023.5007.1|Name=mRNA_Ecto-sp13_S_contig17023.5007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1791bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17023:1174..2964+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCGTTTGTGGAGGGTGAGTCCGCCATTTGTTTGTGGGTTCAAAGCAA
CAGCAACGCCGCCGTAGCGTCAAGCCGCAAGGACTACTTTACAAGCGTGC
TGGATGTATGCATAGGTGCGGTGTACTGCTTTTTGGCCCAATAACACCCT
CTGTTGACCCAAGGACCGGAGGCGTATGAGGCTCCCCTCCCATACATCGG
GGTCCAACAAAAAGAAAACAAATTATTTCGCGCGAAGCGCGAAAAGAAGG
GTTGGAGATGGACATCAATACAAGCGTAAAAAGATATGGATGGAGCCTAC
GCCACCACGTAGGTCACCAGTGCGCACGCTCACACCTCACCCGGTACCTC
GAGTCAGTCAGGGGATGAATAACAGCGCTGTTTAGCTCTCATCATCATCA
GCTCAGCGGCAGCAGTGCTGCTGCTGCTACTCTGCTTGCTGTTACGGTGC
TGCTGCTGCTGGTATGCATGGGTGTGCACTTGCTTTCTTCGCTTTCGCTA
CTACAGAAGCAGAGGGCAACGGGCTCTAAAAATTGGCCCGGACCCTTCCC
ACGACGTGTGTATTTGGCCGCCCTTGGCTTACAGCGCTGTGAACGTCTCA
CGTGTCTCTGTTTCTGGGGCACGTCTGTTGTGGAAGCAAAGATCGGCCGG
CAGACGAAGAGACCGCAGACAGACATGTGACTGGTGTGCACTCACATGTT
CCCTCGCTTGCGTTGCTAGCAGCAGGCCTCGGGGTCTAAAAATAGCTTCC
GACGACAGCCATGCGTGTATCTTTGGCCGGCCTTAGCCTAGAGCAGTGTG
TCTGTCTCGTTGTCTCTGTTGTGTGCGGATGCGTCTGTGTGGGAAGCTCC
AAAGATCGGTAGGTTGAGGTGATGCAGACGGACCGCAGATTGACTTGCGT
CGTCACTCGCTTGTGCTGCCGACAGCAGGCAACGGGCTGTAAGAGTCATA
CCCAACGCCTTCTATGATGTGTGCCTTTGGCTGCCCTTGGCCTACAGCAG
TCTGTATACTGCTGTGCTGGTTGTCTCGTGTGTTCTCTCCGTGGTGTGTG
TGGTGCTGCTGTGCAAGAGGGTTTCGGGGGTTCTCCCGAGAGCGTCGTTC
CCATCGCTCAATCAGCTGTGTCTGTCCAACATAATGTCCTACATAGTCGA
CATCTGATTGGTTGGAGGACGGCATCTACCCGGCTCTACCCCTCTAAAAC
TTCGATGATTTTTTTTGTTCTTCCGGTCCAACATAATTTTTGCCCTACGT
ATGGGTGCTGCAATTTTCTCGAGTCTTCTTGCGGCTTTTTAGAGTTTCGA
CAGTCTCGTGGTAGAAACGCCTCCAAAAATGAAGTCGAATTTTTTTTGAA
ATTACGCCGCATGTGTCCAAAATGGAATTACTCCAGCGCTCCAGCCTCCA
GGGCTTATAACATCGTGGTTCGGGTTTCTTGGCCGGTGGTATGCACCAAC
ACATATCACCCTTCCCGGTGAACATGGCGGTTGAGCGCCGCATATGCGCA
GCATGCCGAGATCCCTCGGGTGTGCAGGTGTGCCAAGTAGCTTGGACGGT
AACAACATTACTTACTTGTTGAGTTGATGCCTCTCATAGAACAGGACACA
AGCACACCCGGACAGACCCACAGCCAGCCAGCCACGTACACTCCTATTGC
CACCTTTCTCGAATCATGGTCATCCTTCCCTTGCAACCCTTCAAGTAAAA
AAGGAGCGCGTCTTGGCCTACCTAGCGAACAGCTGCGGCTGGCCCTCGGC
GCACACTTTCTCGGGGTCTCATGTCTCAGCTGTCATGCCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17023:1174..2964+

>mRNA_Ecto-sp13_S_contig17023.5007.1 ID=mRNA_Ecto-sp13_S_contig17023.5007.1|Name=mRNA_Ecto-sp13_S_contig17023.5007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17023:1174..2964+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCGTTTGTGGAGGGAGCGCGTCTTGGCCTACCTAGCGAACAGCTGCG
GCTGGCCCTCGGCGCACACTTTCTCGGGGTCTCATGTCTCAGCTGTCATG
CC
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