mRNA_Ecto-sp13_S_contig17017.5004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: D8LL92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL92_ECTSI) HSP 1 Score: 403 bits (1036), Expect = 9.340e-137 Identity = 201/215 (93.49%), Postives = 209/215 (97.21%), Query Frame = 1
Query: 1 LHSHSYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAGTVFLSAYAEERVEGSETDSMWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPADLLDLEELGKGGVQGVAALGFDVVSVANGGESEFLPEVYRPFFKPGE 645
++ SYS+LWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAG+VFLSAYAEERVEGSETDSMWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFH LVAEVAVPG GPGGSS VAAAR GGRVR+FLSDVSEPADLLDLEE+GKGG++GVAALGFDVVSVANGGESEFLPEVYRPFFKPGE
Sbjct: 116 VNPRSYSELWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAGSVFLSAYAEERVEGSETDSMWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHVLVAEVAVPGSGPGGSSVVAAARDGGRVRVFLSDVSEPADLLDLEEMGKGGIRGVAALGFDVVSVANGGESEFLPEVYRPFFKPGE 330
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A6U1NKJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NKJ8_9STRA) HSP 1 Score: 139 bits (349), Expect = 3.150e-34 Identity = 78/210 (37.14%), Postives = 117/210 (55.71%), Query Frame = 1
Query: 13 SYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAA--GTVFLSAYAEERVEGSETDS-MWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPADLLDLEELGKGGVQGVAALGFDVVSVANGGESEFLPEVYRPFF 633
SY WVPE SP ++ + ++KDG PRY+MP +D+ K G+ WRNRGLNS+P+A WE A + LS +A VEG E ++ W IAEK+ + D +V+++ADPPEE I SGFH L+ +A + + G +R F++D +P +L+L +G G + L + + + G+SEFLP+VY P +
Sbjct: 115 SYHLFWVPEDSPPLLLRPAVVAVLKDGKPRYIMPGLDITAEKAGQVWRNRGLNSLPLAGQWESFLDTALDLSKLTLSVFARHPVEGEEGNTNAWTTIAEKVNLLDTLDRLVAIMADPPEE--ISSGFHVLIMPIA--------DTTLQVPSGTNNMRAFITDYPDPKRMLELPSMGSDGSE----LDIQIEKILSAGKSEFLPQVYAPLY 310
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A6V1VC31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VC31_HETAK) HSP 1 Score: 132 bits (332), Expect = 6.440e-32 Identity = 74/209 (35.41%), Postives = 119/209 (56.94%), Query Frame = 1
Query: 13 SYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAGTVFLSAYAEERVEGSETDSMWGAIA--EKLPVTDAFTDIVSVLADPPEELDIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPADLLDLEELGKGGVQGVAALGFDVVSVANGGESEFLPEVYRPFF 633
S+S LW+P SP P ++ L +L+KDG PRYV+P +D + +GGR+WRNRG+ + P+AH W+ + +S Y +++ + DS W A E+L A +++++ + P E I +GFHF+ A + VP A + R+R+FL+D+ +P LL+LE+ G G L +V +A GES+++P+VYR F
Sbjct: 99 SFSDLWIPMDSPQPMLRPTLMVLLKDGNPRYVLPGLDTFLEQGGRRWRNRGMRTFPMAHVWQLFLAVPPEFLKISVYTNQKIPDTINDS-WEKFADCEELGAVGALDAVLALVGEGPPE--IKNGFHFVAAPLPVP--------AAPIPQNCQRIRVFLNDIEDPIRLLELED---GAETGGGVLDVEVTEIAPAGESQYIPDVYRQLF 293
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A836CL77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL77_9STRA) HSP 1 Score: 113 bits (283), Expect = 5.130e-25 Identity = 84/259 (32.43%), Postives = 121/259 (46.72%), Query Frame = 1
Query: 1 LHSHSYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLV-------------------------------VSKGGRKWRNRGLNSVPVAHTWEPVERAAAGTVFLSAYAEERVE-----------------GSETDSMWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPADLLDLEELGKGGVQGVAALGFDVVSVANGGESEFLPEVYRPFF 633
+ S + LWVPEGS P + + ML+KDG PRY+ P +D V V++GGR WRNRG+ SV +AH+W+ + LSAY V G++TD+ W A+AE + V A ++ V+ADPP EL+ G LVA V G++ G ++R+FLSD P LL++E +G A L V VA+ +SE+LP++YRP +
Sbjct: 50 VEPRSCAALWVPEGSTVPTATVGVAMLVKDGRPRYLFPHLDTVXXXXXXXXXXXXPRPSLXXXXXXXXXXXXXVVARGGRAWRNRGVASVALAHSWQQFAHVPVQDLSLSAYVGAPVPQEEGXXXXXXXXXXXXXGAKTDA-WHAVAEGVEVEAAVLQLMGVIADPPAELN--DGISILVAPVK-------GAAPFPLPPDGSKIRVFLSDYPAPVRLLEVET-----TRG-AQLEVRVERVASAAKSEYLPDIYRPLY 292
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A7S0ERZ3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ERZ3_9EUKA) HSP 1 Score: 96.3 bits (238), Expect = 1.370e-18 Identity = 76/256 (29.69%), Postives = 112/256 (43.75%), Query Frame = 1
Query: 13 SYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSK----GGRKWRNRGLNSVPVAHTWEPVERAAAGTVFLSAY----------------AEERVEGSETDSMWGAIAEK-------------------------LPVTDAFTDIVSVLADPPEEL-DIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPADLLDLEELGKGGVQGVAALGFDVVSVANGGESEFLPEVYRPFFKPG 642
S+ QLW+PE P P+ L + +++KDGVPRY++P ++ ++ G W NRGLNSVP+ W A G L AY A G+ + GA E PV +A I+ VLA+ E+ ++G G+HF+ A V GG+ R G ++RL L+ + + D E G+ + A V S+ GGESEF+PE Y+P + G
Sbjct: 72 SFEQLWLPEDLPLPSSHLAVSLVIKDGVPRYLLPCIETSITTVSGVSGTVWHNRGLNSVPLGAQW-----MAWGEAPLKAYRLFSFGSDFKPPAPPPARRHPRGARAAAEEGAAEEADTAEEELPPAWEPLQVMADRPGGGGQPVEEALGSIMRVLAEAGAEIKEMGEGYHFITARV------DGGALPADTVRPGRKLRLILATALDDPNPNDEEWEGE--MLSFARCDTTVYSIPAGGESEFMPECYKPLYGAG 314
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A7S2EFX4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EFX4_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 3.060e-13 Identity = 60/181 (33.15%), Postives = 84/181 (46.41%), Query Frame = 1
Query: 13 SYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVS-KGGRKWRNRGLNSVPVAHTWEPVERAA-AGTVFLSAYAEERVEGSETDSM---------WGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHFLVAEVAVPGIGPGGSSAVA-----AARGGGRVRLFLSDVSEPAD 507
S+ QLW+P P P LG+++KDGVPRY P V+ +++ + G W NRGLNS+P+A TW P A T+ L+ Y + E D W A + V A + + +A+ P EL GF +LV + P + A A G RVR LSD+ D
Sbjct: 115 SFEQLWLPMDLPPPTASAALGLVLKDGVPRYAFPTVETILATRDGGAWHNRGLNSLPLAKTWMPFFNVVNADTLSLACY-HRSMPTEENDXXXXXXXXXEEWKAAFPRTDVKGALDLLFNAIANGPNELS--EGFCYLVTPL------PSSDAQSAFLTKSAVIPGQRVRCLLSDLDTMPD 286
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A7S4R144_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R144_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 5.120e-12 Identity = 62/175 (35.43%), Postives = 81/175 (46.29%), Query Frame = 1
Query: 13 SYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVD--LVVSKGGRKWRNRGLNSVPVAHTWEPVERAA-AGTVFLSAY-----AEERVEGSET--DSMWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPAD 507
S+ QLW+P P P LG+++KDGVPRY P V+ L GG + NRGLNS+P+A TW A T+ L+ Y EE E E D W A + V A + + +A+ P EL GF FL+ + P S A G VR LSD+ D
Sbjct: 90 SFEQLWLPMDLPPPTASAALGLVLKDGVPRYAFPTVETALATRDGGAR-HNRGLNSLPLAKTWLQFFNVVNADTLSLACYHRSMPTEENDEDDEQKQDEEWKAAFPRTDVKGALDLLFNAIANGPNELS--EGFCFLITPLPSSDTQPAFLSKQAVIPGQ-CVRCLLSDLDTMPD 260
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A0M0K6T8_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K6T8_9EUKA) HSP 1 Score: 75.1 bits (183), Expect = 6.340e-12 Identity = 63/229 (27.51%), Postives = 97/229 (42.36%), Query Frame = 1
Query: 64 LCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAGTVFLSAY--AEERVEGSETDS---------------------------MWGAIAEKLPVTDAFTDIVSVLADPPEELD---IGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPADLLDLEELGKGGVQG------VAALGFDVVSVANGGESEFLPEVYRPFFK 636
+ +G+++++G PRY+ P +D + G++WRNRG+ SVP+A TW + A + LS++ A EG T + W + V DA + + L + P+ L +G GF FL+A P G A R GGR+RL LSD LE+ G G G + +V G +S +LP YR ++
Sbjct: 1 MAIGLVLRNGEPRYIFPTIDTYLDAAGKRWRNRGIFSVPLAKTWLHYGESPADNLRLSSFVIAPTLAEGDATAAPTAXXXXXXXXXXXXSKASGRTWERFGQWEQCMDHQQVLDALDEAFAALDNLPDALSRTSLGQGFCFLIA----PLPDKGAMLPETALRPGGRLRLLLSD---------LEDWGTDGNDGREPAWQYGDCELSMYTVPPGRDSPYLPTPYRELYE 216
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A7S0JIP9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIP9_9EUKA) HSP 1 Score: 66.6 bits (161), Expect = 1.670e-9 Identity = 53/160 (33.12%), Postives = 79/160 (49.38%), Query Frame = 1
Query: 61 KLCLGMLMKDGVPRYVMPMVDLVVSKG-GRKWRNRGLNSVPVAHTWEPVERAAAGTVFLSAYAEERVEGSETDSMWGAIAEKLPVTDAFTDIVSVLADPPEEL---DIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGG-RVRLFLSDVSEPADLLDLEE 525
++ LGM++++G PRY+ P +D + G WRNRGLN+VP+A TW + A ++ LSAY S D+ I PV A L + P L +G GF FL+ + P + A A G R+R+FLSD+ + L + E+
Sbjct: 1 RIALGMVLRNGEPRYIFPALDTYIETADGMAWRNRGLNTVPLAKTWLHYGESPADSLRLSAYI-----SSCPDAPAEQIFGHRPVAAALDAACESLENLPPLLKRSSLGDGFCFLLCPL--PDLPESEQFLPARALAPGTRLRVFLSDIEKDILLPNTEQ 153
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Match: A0A448ZAV6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAV6_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.410e-6 Identity = 53/216 (24.54%), Postives = 100/216 (46.30%), Query Frame = 1
Query: 13 SYSQLWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAGT------VFLSAYAEERVEGSETDSMWGAIAEKLP---VTDAFTDIVSVLADPPEELDIGSGFHFLVAEVAVPGIGPGGSSAVAAARGGGRVRLFLSDVSEPADLLDLEELGKGGVQGVAALGFDVVSVANGGESEFLPEVYRPFF 633
S Q++ P P +KL +G+ ++ G+ R+V+P +D+ KG RNRGL SVP+AH W ++ + LS+ +R + +W ++ LP + A + LA+ + +G G H + +A+ + + + VR+ + +V + + D+E + L +V+ +G +SE+LPE Y+P +
Sbjct: 98 SIDQIFQPVDLKRPEIKLAVGIHVRSGIIRHVLPALDISYGKGTH--RNRGLCSVPLAHNWVDFGYLSSLADYNRYQLILSSAKRQRSSDXVDNRIWDKLS-SLPGNAIARAIERAIVCLAEEDSDA-LGEGSHII--HIALDD-----AKVLEMPKPKNDVRVTMVEVGDEGEQ-DIE---------IGILDVAIVTAMSGSDSEYLPEAYKPLY 292 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17017.5004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17017.5004.1 >prot_Ecto-sp13_S_contig17017.5004.1 ID=prot_Ecto-sp13_S_contig17017.5004.1|Name=mRNA_Ecto-sp13_S_contig17017.5004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp MKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVEback to top mRNA from alignment at Ecto-sp13_S_contig17017:17..2770+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17017.5004.1 ID=mRNA_Ecto-sp13_S_contig17017.5004.1|Name=mRNA_Ecto-sp13_S_contig17017.5004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2754bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17017:17..2770+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17017:17..2770+ >mRNA_Ecto-sp13_S_contig17017.5004.1 ID=mRNA_Ecto-sp13_S_contig17017.5004.1|Name=mRNA_Ecto-sp13_S_contig17017.5004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17017:17..2770+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |