prot_Ecto-sp13_S_contig990.21544.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig990.21544.1
Unique Name	prot_Ecto-sp13_S_contig990.21544.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	217

Homology

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: D8LKC5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKC5_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 2.170e-149
Identity = 209/216 (96.76%), Postives = 214/216 (99.07%), Query Frame = 0

Query:    1 MKSAIAALALGAVGSNAFVTPNAVVGRVASRSARQVSMASDPDASIALPFTPRPENLTGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEWSNQFH 216
            MKSAIAALALGAVGSNAFVTPNAVVGRVASRSARQVSMA+DPDASIALPFTPRPENL GELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEF+VLPGLGYTPTKNLFQAVADAPWLA+LQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWAL+ELKHGRLAMWAMAAIL+QQLLVPDKSPLELTYEWS QFH
Sbjct:    1 MKSAIAALALGAVGSNAFVTPNAVVGRVASRSARQVSMAADPDASIALPFTPRPENLNGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFSVLPGLGYTPTKNLFQAVADAPWLAVLQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELTYEWSTQFH 216

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: A0A835YVN7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN7_9STRA)

HSP 1 Score: 237 bits (605), Expect = 4.050e-76
Identity = 128/219 (58.45%), Postives = 160/219 (73.06%), Query Frame = 0

Query:    1 MKSAIAALALGAVGSNAFV--TPNAVVGRVASRSARQVSMAS--DPDASIALPFTPRPENLTGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEWSNQF 215
            MK+  A LAL A  + AFV   P+A+     + + + +S  S  D + S++LPF  +P NL GELVGDVGFDPL FS++GDLAK+RRAELKHGRVAMLGV+G+I QE   + G  +  TKNLF AV DA  LA+LQV  FVG +D+ +TK++   GRVPGDIGFDPL+LSKDGINE WALSELKHGRLAM AM A L+Q L+ P+KS LE T++W+  F
Sbjct:    1 MKAVAALLALAAPAA-AFVPVAPSALPATQLAAAKQTMSEVSSGDDERSVSLPFAAKPANLNGELVGDVGFDPLRFSDKGDLAKFRRAELKHGRVAMLGVLGSILQESYSVQGPDFKTTKNLFAAVTDAGPLALLQVFAFVGAYDVATTKWEEANGRVPGDIGFDPLRLSKDGINETWALSELKHGRLAMIAMFAFLIQTLVEPNKSILEQTFDWARSF 218

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: A0A7S1U1W6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1W6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.780e-58
Identity = 103/205 (50.24%), Postives = 133/205 (64.88%), Query Frame = 0

Query:    8 LALGAVGSNAFVTPNAVVGRVASRSARQVSMASDPDASIALPFTPRPENLTGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEWS 212
            +AL A+ S A   P  V GR       Q++MA+D  A  A+PF  +PENL GEL GD+GFDP  FS+  DLA  R AELKHGRV ML   G + QE   L      P+ N  +A+  AP L I+Q+++ +G  + Q++ Y    GRVPGD GFDPLKLS++GINEKWAL ELKHGRLAMWA A +LVQ L+ PD   ++ T++W+
Sbjct:    6 VALAALASAAAFAPARVGGR------GQMAMAADKSA--AIPFADKPENLNGELAGDIGFDPFRFSDSRDLAYLREAELKHGRVCMLAATGILTQEVTRLSDA--FPSTNCLEALKTAPTLGIIQIILVIGALEAQNSNY---VGRVPGDRGFDPLKLSENGINEKWALMELKHGRLAMWATAGMLVQTLVNPDVPIIQQTFDWA 197

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: W7TNE9_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNE9_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.380e-50
Identity = 92/166 (55.42%), Postives = 120/166 (72.29%), Query Frame = 0

Query:   45 SIALPFTPRPENLTGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYE 210
            SIALPF  +P+NL GEL GDVGFDP  FS++GD+AK+R AELKHGRVAML VVG + QE  +       P+KN  +A+  AP L +LQ+ VF+G +D+ ++K++   GRVPGDIGFDPL+LS DG+ E W ++ELKHGRLAM A  A +VQ   + DK  LE T++
Sbjct:   44 SIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQE--LYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFE---GRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQAS-ISDKPILEQTFD 203

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: K8YRV9_NANGC (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRV9_NANGC)

HSP 1 Score: 170 bits (430), Expect = 7.430e-50
Identity = 88/171 (51.46%), Postives = 116/171 (67.84%), Query Frame = 0

Query:   45 SIALPFTPRPENLTGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEWSNQF 215
            SIALPF  +P+NL GEL GDVGFDP  FS++GD+AK+R AELKH        VG + QE  +       P+KN  +A+  AP L +LQ+ VF+G +D+ ++K++   GRVPGDIGFDPL+LS DG+ E W ++ELKHGRLAM A  A +VQ   + DK  LE T+EW+  F
Sbjct:   44 SIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKH--------VGVLVQE--LYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFE---GRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQAS-ISDKPILEQTFEWAKSF 200

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: A0A0G4GWW0_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4GWW0_VITBC)

HSP 1 Score: 166 bits (421), Expect = 4.150e-48
Identity = 85/184 (46.20%), Postives = 115/184 (62.50%), Query Frame = 0

Query:   35 QVSMASDPDASIALPFTPRPENLTGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAI------WQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEWS 212
            Q+SM  D + S+ALPF  +P+NL GELVGDVGFDP  F+   DLA+ R  ELKHGRV ML  +G +      W E          P+KN  +A   AP L ++Q+++ +   +  +  +    GR+PGD GFDPL+LS++GI E W L ELKHGRLAM     ++VQQLL PD+S +E+T  W+
Sbjct:   41 QISM-QDIEKSVALPFARKPDNLNGELVGDVGFDPFGFTNNQDLARMREVELKHGRVCMLATLGVLVQSTYRWNEA--------FPSKNFLEAPLTAPTLGMIQLLLVISAIEYYNGNF---VGRIPGDRGFDPLRLSREGIRENWQLMELKHGRLAMIGFLGMVVQQLLRPDESIVEMTINWA 212

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: A0A8J5XNK9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNK9_DIALT)

HSP 1 Score: 151 bits (381), Expect = 1.940e-42
Identity = 86/187 (45.99%), Postives = 114/187 (60.96%), Query Frame = 0

Query:   28 VASRSAR-QVSMASDPDASIALPFTPRPENLTGELVGDVGFDPLNFSEEGD---LAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYE 210
            +A RS R  V M ++ D S A+PF  +P+NL GEL+ D+GFDP  F+ +     +AK+R AELKHGRV ML V+G + QE             N   A+A  P L ILQ++V  GI + ++  Y    GR+PGDIGFDPL LS  GI E WA++E+KHGRLAM A  A  VQ + V  +S L  T++
Sbjct:   17 LAGRSPRGAVRMVTEDDLSAAIPFVAKPKNLNGELLCDIGFDPAGFTNKASPEKIAKFREAELKHGRVCMLAVLGFVAQELIAPYQAAPFNEVNPINAIAAVPALGILQIIVLCGIIENRTQGY---AGRIPGDIGFDPLGLSAGGIKEDWAIAEIKHGRLAMIAFLAFQVQ-IKVSGESVLSTTFD 199

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: A0A0G4FN06_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FN06_9ALVE)

HSP 1 Score: 144 bits (363), Expect = 5.520e-39
Identity = 71/154 (46.10%), Postives = 100/154 (64.94%), Query Frame = 0

Query:   59 GELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEWS 212
            G+L GD+G+DPLN +E GD+ + R AEL+HGR+AML  +G + Q         + P+KN   A+  AP L I Q+   +G ++ ++  Y+   GR+PGD GFDPL LSK+GI  +W  SEL+HGRLAM+    +LVQQLL P +S +E T  W+
Sbjct:   94 GDLAGDLGWDPLNLAEGGDIVQLREAELRHGRLAMLATLGVLVQSTYRWDSENF-PSKNFLDALFTAPPLGIFQIFAAIGWWEFKNKDYE---GRIPGDRGFDPLGLSKNGIRPQWEKSELEHGRLAMFMFLGMLVQQLLSPKESIVEQTISWT 243

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: A0A7S1TZN6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZN6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.250e-36
Identity = 67/135 (49.63%), Postives = 89/135 (65.93%), Query Frame = 0

Query:   78 LAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEWS 212
            +A    AELK GRV ML   G + QE   L      P+ N  +A+  AP L I+Q+++ +G  + Q++ Y    GRVPGD GFDPLKLS++GINEKWAL ELKHGRLAMWA A +LVQ L+ PD   ++ T++W+
Sbjct:    3 VASLGEAELKQGRVCMLAATGILTQEVTRLSDA--FPSTNCLEALKTAPTLGIIQIILVIGALEAQNSNY---VGRVPGDRGFDPLKLSENGINEKWALMELKHGRLAMWATAGMLVQTLVNPDVPIIQQTFDWA 132

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BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Match: A0A8J6CAR8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAR8_DIALT)

HSP 1 Score: 129 bits (324), Expect = 1.110e-33
Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = 0

Query:   47 ALPFTPRPENLTGELVGDVGFDPLNFSEE----GDLAKYRRAELKHGRVAMLGVVGAIWQEFNVLPGL-GYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVPDKSPLELTYEW 211
            ALP+ PRP+NL G L  DVGFDP  FS+      +L +YR AELKHGRV ML V G + QE    P   G                             +++S  Y   QGRVPGD+GFDPL LS +GIN  +A +E++HGRLAMWA AA LVQ  L  +   L+ T +W
Sbjct:   46 ALPWAPRPKNLDGSLTSDVGFDPAGFSDRIESIEELYRYRAAELKHGRVCMLAVTGMLVQEVYSWPAPDGVFKAXXXXXXXXXXXXXXXXXXXXXXXXXEVRSANY---QGRVPGDLGFDPLGLSANGINPNFAKAEIEHGRLAMWATAAFLVQSQLTGEPI-LKTTMDW 211

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig990.21544.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LKC5_ECTSI	2.170e-149	96.76	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835YVN7_9STRA	4.050e-76	58.45	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7S1U1W6_9STRA	1.780e-58	50.24	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
W7TNE9_9STRA	4.380e-50	55.42	DNA-directed RNA polymerase subunit n=1 Tax=Nannoc...	[more]
K8YRV9_NANGC	7.430e-50	51.46	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A0G4GWW0_VITBC	4.150e-48	46.20	Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ...	[more]
A0A8J5XNK9_DIALT	1.940e-42	45.99	Uncharacterized protein n=1 Tax=Diacronema lutheri...	[more]
A0A0G4FN06_9ALVE	5.520e-39	46.10	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
A0A7S1TZN6_9STRA	2.250e-36	49.63	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A8J6CAR8_DIALT	1.110e-33	44.12	Uncharacterized protein n=2 Tax=Diacronema lutheri...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 54..196 e-value: 4.6E-36 score: 124.8
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 48..216 e-value: 7.9E-40 score: 138.6
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 29..207
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..216
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.458
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 38..206
None	No IPR available	TMHMM	TMhelix		coord: 4..26
None	No IPR available	TMHMM	TMhelix		coord: 118..140
None	No IPR available	TMHMM	TMhelix		coord: 91..113
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 29..207

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig990	contig	Ecto-sp13_S_contig990:1062..4599 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig990.21544.1	mRNA_Ecto-sp13_S_contig990.21544.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig990 1062..4599 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig990.21544.1 ID=prot_Ecto-sp13_S_contig990.21544.1|Name=mRNA_Ecto-sp13_S_contig990.21544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MKSAIAALALGAVGSNAFVTPNAVVGRVASRSARQVSMASDPDASIALPF
TPRPENLTGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAI
WQEFNVLPGLGYTPTKNLFQAVADAPWLAILQVVVFVGIFDLQSTKYDIE
QGRVPGDIGFDPLKLSKDGINEKWALSELKHGRLAMWAMAAILVQQLLVP
DKSPLELTYEWSNQFH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln