prot_Ecto-sp13_S_contig975.21398.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig975.21398.1
Unique Nameprot_Ecto-sp13_S_contig975.21398.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length159
Homology
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BLAST of mRNA_Ecto-sp13_S_contig975.21398.1 vs. uniprot
Match: A0A6H5L1G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G3_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 1.740e-88
Identity = 144/158 (91.14%), Postives = 148/158 (93.67%), Query Frame = 0 
Query:    1 MIGAAWRLVLLALALALSTCTAFHVSPASFGRQPVGRAASLRPSATQSQHVSPFTRASRHTGASRTTTRGPSMAAGEPGSNKSAQRVAAVAGVASTATLTGSAVPAHADNFAEYFAKGIVGTINGPGILAIPIVLGIGLASAIAFFIYFFSQPREYDD 158
            M+GA WRLVLLALA  LS CTAFHVSP SFGRQPVGRAASLRPSATQSQHV+PFTRA RHTGASRT+TRGPSMAAGEP S+KSAQRVAAVA VAS ATLTGSAVPAHADNFAEYFA GIVGTINGPGILAIPIVLGIGLASAIAFFIYFFSQPREYDD
Sbjct:    1 MMGATWRLVLLALAFVLSACTAFHVSPTSFGRQPVGRAASLRPSATQSQHVAPFTRAYRHTGASRTSTRGPSMAAGEPLSSKSAQRVAAVAAVASAATLTGSAVPAHADNFAEYFANGIVGTINGPGILAIPIVLGIGLASAIAFFIYFFSQPREYDD 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig975.21398.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1G3_9PHAE1.740e-8891.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 151..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..150
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.94
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
NoneNo IPR availableTMHMMTMhelixcoord: 128..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig975contigEcto-sp13_S_contig975:11340..12422 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig975.21398.1mRNA_Ecto-sp13_S_contig975.21398.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig975 11289..13413 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig975.21398.1 ID=prot_Ecto-sp13_S_contig975.21398.1|Name=mRNA_Ecto-sp13_S_contig975.21398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MIGAAWRLVLLALALALSTCTAFHVSPASFGRQPVGRAASLRPSATQSQH
VSPFTRASRHTGASRTTTRGPSMAAGEPGSNKSAQRVAAVAGVASTATLT
GSAVPAHADNFAEYFAKGIVGTINGPGILAIPIVLGIGLASAIAFFIYFF
SQPREYDD*
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