prot_Ecto-sp13_S_contig9729.21363.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9729.21363.1
Unique Nameprot_Ecto-sp13_S_contig9729.21363.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length277
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9729.21363.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 9.060e-106
Identity = 204/250 (81.60%), Postives = 208/250 (83.20%), Query Frame = 0 
Query:   28 GGNESHCARCSNADAGGQAQVITCSECGQGFHTFCVGEKRIPYSLFPPEQRVLRDAFVAEHIGARWQCSKCQTQASQATLSPFQAAGNDLYTPPYRDFGSRSSSTSKLLVLPGVKEDGGGTXXXXXXFFLSRGVSGDGGDFDADLADVSPSKGPVEPSSAPLPVPCWSRSESKDSVMVEPSSAPSSLLAPGTDSATPRNGEEDXXXXXXXXXVADAGGGEEVGSEGKLDEEVDGPETGGGAEEAATAVGA 277
            GGNE HCARCSNADAGGQAQVITCSECGQGFHTFCVGEKRIPY+LFPPEQRVLRDAFVAEHIGARWQCSKCQTQASQAT+SPFQAAGNDLYTPPYRDFGSRSSSTSKLLVLPGVKEDGGG XXXXXX             FDADLADVSPSKGPVEPSSAPL VPCWSRSESKDSV+VEPSSAPSSLLA GT  ATPRNGEE XXXXXXXXX        EVG EGK  +E D        E AATA GA
Sbjct:  610 GGNEPHCARCSNADAGGQAQVITCSECGQGFHTFCVGEKRIPYALFPPEQRVLRDAFVAEHIGARWQCSKCQTQASQATMSPFQAAGNDLYTPPYRDFGSRSSSTSKLLVLPGVKEDGGGXXXXXXXXXXXXXXXXXXXXFDADLADVSPSKGPVEPSSAPLSVPCWSRSESKDSVVVEPSSAPSSLLALGTGPATPRNGEEXXXXXXXXXXXXG-----EVGGEGKCQQEADXXXXXXXXELAATAAGA 854
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BLAST of mRNA_Ecto-sp13_S_contig9729.21363.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 4.130e-105
Identity = 185/223 (82.96%), Postives = 191/223 (85.65%), Query Frame = 0 
Query:   28 GGNESHCARCSNADAGGQAQVITCSECGQGFHTFCVGEKRIPYSLFPPEQRVLRDAFVAEHIGARWQCSKCQTQASQATLSPFQAAGNDLYTPPYRDFGSRSSSTSKLLVLPGVKEDGGGTXXXXXXFFLSRGVSGDGGDFDADLADVSPSKGPVEPSSAPLPVPCWSRSESKDSVMVEPSSAPSSLLAPGTDSATPRNGEEDXXXXXXXXXVADAGGGEEVG 250
            GGNE HCARCSNADAGGQAQVITCSEC QGFHTFCVGEKRIPY+LFPPEQRVLRDAFVAEHIGARWQCSKCQTQASQAT+SPFQAAGNDLYTPPYRDFGSRSSSTSKLLVLPGVKEDGGG XXXXXX             FDADLADVSPSKGPVEPSSAPLP PCWSRSESKD+V+VEPSSAPS LLAPGT  ATPR G+           VA+AGGGEEVG
Sbjct:   82 GGNEPHCARCSNADAGGQAQVITCSECSQGFHTFCVGEKRIPYALFPPEQRVLRDAFVAEHIGARWQCSKCQTQASQATMSPFQAAGNDLYTPPYRDFGSRSSSTSKLLVLPGVKEDGGGXXXXXXXXXXXXXXXXXXXXFDADLADVSPSKGPVEPSSAPLPAPCWSRSESKDAVVVEPSSAPSWLLAPGTGPATPRKGKA----------VAEAGGGEEVG 294
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BLAST of mRNA_Ecto-sp13_S_contig9729.21363.1 vs. uniprot
Match: A0A7S3XUL3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUL3_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-5
Identity = 29/104 (27.88%), Postives = 48/104 (46.15%), Query Frame = 0 
Query:   34 CARCSNADAGGQAQVITCSECGQGFHTFCVGEKRIPYSLFPPEQRVLRDAFVAEHIGARWQCSKCQT-----QASQATLSPFQAAGN-DLYTPPYRDFGSRSSS 131
            C +C       + Q++ C++C    HTFC GEKRIP+      +R     ++  H  A W+C  C+      +  +  L  F +  +   Y+PP RD  S  ++
Sbjct:   70 CFKCGENGVIDKPQLLVCAQCSTRLHTFCAGEKRIPFGFRDNTERKHHAGYLRRHYRA-WRCPDCRPPEEGPRLPKPDLEMFSSPDDRQYYSPPMRDLMSADAA 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9729.21363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE9.060e-10681.60FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI4.130e-10582.96Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S3XUL3_HETAK2.270e-527.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 7..109
e-value: 1.9E-10
score: 42.2
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 34..98
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 31..101
score: 9.089
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 29..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9729contigEcto-sp13_S_contig9729:857..1939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9729.21363.1mRNA_Ecto-sp13_S_contig9729.21363.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9729 857..1939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9729.21363.1 ID=prot_Ecto-sp13_S_contig9729.21363.1|Name=mRNA_Ecto-sp13_S_contig9729.21363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
GGGSVAARQREEGGAEGRSSAANGGFFGGNESHCARCSNADAGGQAQVIT
CSECGQGFHTFCVGEKRIPYSLFPPEQRVLRDAFVAEHIGARWQCSKCQT
QASQATLSPFQAAGNDLYTPPYRDFGSRSSSTSKLLVLPGVKEDGGGTGS
SSSVFFLSRGVSGDGGDFDADLADVSPSKGPVEPSSAPLPVPCWSRSESK
DSVMVEPSSAPSSLLAPGTDSATPRNGEEDEEDEEEEDEVADAGGGEEVG
SEGKLDEEVDGPETGGGAEEAATAVGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD