prot_Ecto-sp13_S_contig9722.21358.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9722.21358.1
Unique Nameprot_Ecto-sp13_S_contig9722.21358.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length288
Homology
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 446 bits (1147), Expect = 3.030e-156
Identity = 258/293 (88.05%), Postives = 263/293 (89.76%), Query Frame = 0
Query:    1 MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPEDFSAQAAGAAAGAEA------PDNTPLPDDVGTGQQPLLAATPGSKYGGKNAKRKLTAGTSSGAAVVAGATRAGAGXXXXXXXXXXXXXXXXXXXXAEARWGEGPEAAVPGESTPGPKKPKGKAGKNKKKNSRHNAW 287
            MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPEDFSAQAAGA            P+NTPLP + GTGQ+PLLAATPGSK GG+NAKRKLTAGTS+GAA VAGAT A   XXX   XXXXXXXX  XXXX   RWGEGPEAAVPGESTPGPKKPKGKAGKNKK NSRHN W
Sbjct:    1 MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPEDFSAQAAGAXXXXXXXXXXXXPENTPLPVNGGTGQKPLLAATPGSKRGGRNAKRKLTAGTSAGAAFVAGATGAXXXXXXKRRXXXXXXXXSHXXXXXXXRWGEGPEAAVPGESTPGPKKPKGKAGKNKKNNSRHNTW 293          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: UPI001F04DAC0 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04DAC0)

HSP 1 Score: 97.8 bits (242), Expect = 1.820e-21
Identity = 49/130 (37.69%), Postives = 85/130 (65.38%), Query Frame = 0
Query:   13 SLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRA 142
            ++K+F  + G V  ++ PL   S +E+   +   DRA L+L V YG++++F+++L TQGV+P  H VK ELDRI+ Y  ++K+V +  ++ ++K+D+DA+RRF+  AL+      N K ++  S ++KRA
Sbjct:   18 AMKDFHHSFGSVEETLEPLLRSSNDELHEKLDVLDRAKLDLMVVYGINTMFWIYLITQGVNPKEHGVKHELDRIKNYMKKVKDVSER-KKASMKIDKDAARRFVKGALA------NPKASEVVSDKEKRA 140          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.980e-21
Identity = 51/121 (42.15%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    3 GASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGD 123
            G++  +  V  L N  +AL ++++ +RPLT  +REE+   V+ ++ A LN  +AYG+SSL+YM L+T+G   + H VK ELDRI+G  GRL+ V  P  QR + V+  A++RFI   L+G+
Sbjct:   14 GSNSATDFVAPLTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQMVKVP--QRGIVVNVAAAQRFIKHGLAGN 132          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: A7SDV0_NEMVE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SDV0_NEMVE)

HSP 1 Score: 93.2 bits (230), Expect = 1.420e-19
Identity = 45/123 (36.59%), Postives = 78/123 (63.41%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTD 133
            V+S+++F  +LG++ ++++PL   S +++   +     A LNL VAY ++SLF+M+L TQG+ P  HP+K ELDRI+ Y  ++K V    E  ++++D+ A++RF+ +AL     WQ     D
Sbjct:   16 VDSMESFHESLGNIEDALKPLLENSTDDMKESMGPLQLAKLNLVVAYSINSLFWMYLITQGMDPKEHPIKQELDRIKKYMVKVKEVQHKQEV-SMRIDKGAAKRFVKSAL-----WQPTSNED 132          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: UPI00138FBE06 (nuclear nucleic acid-binding protein C1D n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FBE06)

HSP 1 Score: 93.2 bits (230), Expect = 1.520e-19
Identity = 45/123 (36.59%), Postives = 78/123 (63.41%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTD 133
            V+S+++F  +LG++ ++++PL   S +++   +     A LNL VAY ++SLF+M+L TQG+ P  HP+K ELDRI+ Y  ++K V    E  ++++D+ A++RF+ +AL     WQ     D
Sbjct:   16 VDSMESFHESLGNIEDALKPLLENSTDDMKESMGPLQLAKLNLVVAYSINSLFWMYLITQGMDPKEHPIKQELDRIKKYMVKVKEVQHKQEV-SMRIDKGAAKRFVKSAL-----WQPTSNED 132          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: A0A2R2MU34_LINUN (Nuclear nucleic acid-binding protein C1D n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MU34_LINUN)

HSP 1 Score: 93.2 bits (230), Expect = 2.530e-19
Identity = 52/131 (39.69%), Postives = 82/131 (62.60%), Query Frame = 0
Query:    1 MAGASEE--SKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNA 129
            MAG SE+  S+  + L +F+ +L  V ++++PL +    EV   ++  D A +NL  AY V+SLF+ +L  +G +P  HPVK ELDRIRGY  R+K + +  +++  K+D+ AS+RF+ +AL     WQ A
Sbjct:    5 MAGTSEDFPSEIQDQLSSFDDSLTKVEDTLKPLLMTPLNEVHEKLNPLDCAKVNLVAAYAVNSLFWTYLNVRGENPKEHPVKQELDRIRGYMNRVKEIQE--KEKAPKLDKPASKRFVKSAL-----WQAA 128          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: A0A2D4BWA5_PYTIN (Nuclear nucleic acid-binding protein C1D n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWA5_PYTIN)

HSP 1 Score: 91.7 bits (226), Expect = 6.700e-19
Identity = 52/134 (38.81%), Postives = 84/134 (62.69%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPS----THPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQK 140
            VE+L + ++ L  V   ++ L   S EE    +S  ++A + + +AY +++L Y++LKTQGVS      TH VK ELDR++G+  ++K+  +  +  TLK+D++AS+RFIN ALSGD V+ +AK      A+ K
Sbjct:    6 VEALTSVDQTLAAVEEHLQVLKNKSLEEFLAELSPIEKAKVQVSLAYSINALLYVYLKTQGVSSKDIRQTH-VKQELDRVKGFIKKIKDTEELAKGPTLKLDKEASQRFINNALSGDQVYVDAKNARDAEAKTK 138          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: R1DEY4_EMIHU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY4_EMIHU)

HSP 1 Score: 88.6 bits (218), Expect = 6.330e-18
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPE--QRTLKVDQDASRRFINAALSGDS 124
              ++ NFER LG +   VR L      E+ G +   + A L+L VAY +++LFYM+LKTQG+  + HPV  EL+RI+GY  +++   +  E  QR   ++  A++RFI  AL G S
Sbjct:   20 ASAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHALGGPS 135          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: A0A7S3W1R2_EMIHU (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1R2_EMIHU)

HSP 1 Score: 88.6 bits (218), Expect = 7.890e-18
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPE--QRTLKVDQDASRRFINAALSGDS 124
              ++ NFER LG +   VR L      E+ G +   + A L+L VAY +++LFYM+LKTQG+  + HPV  EL+RI+GY  +++   +  E  QR   ++  A++RFI  AL G S
Sbjct:   26 ASAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHALGGPS 141          
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Match: A0A4Y9ZHM4_9AGAM (Exosome complex protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZHM4_9AGAM)

HSP 1 Score: 90.1 bits (222), Expect = 1.070e-17
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0
Query:    4 ASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALS 121
            A E +K    L N   +L  +  ++ PL   S  E    +    +A L + + Y V  L +++LKT+GV P THPV  ELDR+R YF ++KN   PP+ RTL VD+DA+ RFI  A+S
Sbjct:    2 ADETAKLKAKLANLNNSLDGLEEALEPLLSQSLPETVVNLETIQQAKLQVAIPYLVYDLVFIYLKTRGVDPKTHPVIAELDRVRQYFDKIKNAENPPK-RTLPVDKDAANRFIKHAIS 118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9722.21358.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI3.030e-15688.05Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
UPI001F04DAC01.820e-2137.69nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A835ZH36_9STRA5.980e-2142.15Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A7SDV0_NEMVE1.420e-1936.59Nuclear nucleic acid-binding protein C1D n=1 Tax=N... [more]
UPI00138FBE061.520e-1936.59nuclear nucleic acid-binding protein C1D n=1 Tax=N... [more]
A0A2R2MU34_LINUN2.530e-1939.69Nuclear nucleic acid-binding protein C1D n=1 Tax=L... [more]
A0A2D4BWA5_PYTIN6.700e-1938.81Nuclear nucleic acid-binding protein C1D n=2 Tax=P... [more]
R1DEY4_EMIHU6.330e-1839.66Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A7S3W1R2_EMIHU7.890e-1839.66Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A4Y9ZHM4_9AGAM1.070e-1740.68Exosome complex protein n=1 Tax=Hericium alpestre ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 14..92
e-value: 6.5E-10
score: 39.5
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 10..142
NoneNo IPR availablePANTHERPTHR15341:SF3NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1Dcoord: 10..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9722contigEcto-sp13_S_contig9722:3301..5759 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9722.21358.1mRNA_Ecto-sp13_S_contig9722.21358.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9722 2746..5759 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9722.21358.1 ID=prot_Ecto-sp13_S_contig9722.21358.1|Name=mRNA_Ecto-sp13_S_contig9722.21358.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRAT
LNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPP
EQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRAN
PAGQPEDFSAQAAGAAAGAEAPDNTPLPDDVGTGQQPLLAATPGSKYGGK
NAKRKLTAGTSSGAAVVAGATRAGAGAGKKRRSGGGGSSASSGGGPAEAR
WGEGPEAAVPGESTPGPKKPKGKAGKNKKKNSRHNAW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair