prot_Ecto-sp13_S_contig9694.21329.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9694.21329.1
Unique Nameprot_Ecto-sp13_S_contig9694.21329.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length258
Homology
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 1.850e-175
Identity = 250/257 (97.28%), Postives = 251/257 (97.67%), Query Frame = 0
Query:    1 MDLTSGSTQEVVSSVTGFAHASRIKRIMVVKVGAEPRVYAGDEQGRITAWARPSPGAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDSYFLSAGEDGTMMCWNVHKLTDPSPAK 257
            MDLTSGSTQEVVSSVTGFAHASRI RIMV KVGAEPRVY GDE+GRITAWARPSPGA FAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNAC HTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDD YFLSAGEDGTMMCWNVHKLTDPSPAK
Sbjct:  187 MDLTSGSTQEVVSSVTGFAHASRINRIMVAKVGAEPRVYTGDEEGRITAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACVHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDGYFLSAGEDGTMMCWNVHKLTDPSPAK 443          
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: A0A835YKE1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.030e-33
Identity = 90/239 (37.66%), Postives = 127/239 (53.14%), Query Frame = 0
Query:   11 VVSSVTGFAHASRIKRIMVVKVGAEPRV-YAGDEQGRITAWARPSPGAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITKDNG-GHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDSYFLSAGEDGTMMCWNV 247
            V+S    +AH   I  +  +K  A   V ++G ++G I AW   + G  F     LEGH R +T L    +  MLWS+S+D T+R+W+T T AC   I    G GH+G V  +A G  + EG   EY+++GS D +                    V+A+  F  +P +  LLL+G +DG+IA+R+FP F+LAFE+    L VGH  PV ALLP   P   + YF+S  EDG MM W +
Sbjct:  174 VISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAW--KAQGTGFQLGGVLEGHVRGVTCLCMVGN--MLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMA-GPLSIEGEQGEYMVTGSADKS--------------------VTALTCFKTSP-SGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPG-PNLYFMSGAEDGKMMMWQM 385          
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: A0A6U5LIP5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5LIP5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.550e-16
Identity = 78/240 (32.50%), Postives = 108/240 (45.00%), Query Frame = 0
Query:   13 SSVTGFAHASRIKRIMVVKVGAEP-RVYAGDEQGRITAWARPSPGAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEF----ALAFEIHPTSLYV-GHSK-PVLALLPFNNPSIDDSYFLSAGEDGTMMCW 245
            S+V  +AH   +  ++ V  GA    V +  E G I  W   +    F     L GHARA++ L    S G+LWS SED +IR+W+    +C   I   + GH GPV +L    S     L  +V S S DGT+  +  A G +      G GV  I       G + LL+ G E G I VR+ P      AL   I  +  Y   H+  PV  +     P+     F S+G+DG +M W
Sbjct:  212 SAVHPYAHGRIVTSLLPVPDGAGGVAVVSSSEDGLIRVWRFDTGTGKFMVFRSLMGHARAVSGLA--YSEGLLWSGSEDHSIRMWDMSKGSCGKVIAGGSEGHSGPVTSLLAWGSEK---LGAFVFSSSLDGTIKAWDPA-GKMLKMESHGDGVMTIVTTTDEAG-NPLLVCGLERGNIMVRSLPGAGDLPALTLLIKLSDQYTCSHTNGPVRCVQAGAGPA---GIFYSSGDDGKLMVW 441          
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: A0A7S3HF87_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF87_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.940e-14
Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 0
Query:   38 VYAGDEQGRITAWARPSPGAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITKDNGG--HEGPVAALAIGQSAAEGTLAE-YVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDSYFLSAGEDGTMMCWNV 247
            + AG E G I  W   +    F Q+  LEGH RA+T+++   +  +LWS S D T+R+W+  +  C  T+   NGG  H   V  L         T AE ++ SG+ D  + ++    G L +    G  V+++ AF  T G   +LL+G  DGTI VR+     + F +  +   + H+K + +++      +  S F +  +DG ++ W V
Sbjct:  227 ITAGGE-GLIRTWRFDASKGGFEQIMVLEGHIRAVTTVL--LNGALLWSGSVDSTLRVWDLASGKCLATLAAANGGPGHTQAVTCLEF----VPNTGAEPFIASGAADNAVKLW-GTTGSLLHTVTHGAMVTSLKAFKDTLGGIQVLLIGLLDGTIHVRSCMSMKILFTLDAS---ICHTKAIWSIV-----DLGQSCFGAGSDDGQIVVWKV 423          
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: A0A7R9WQC1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQC1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.600e-13
Identity = 80/250 (32.00%), Postives = 111/250 (44.40%), Query Frame = 0
Query:   18 FAHASRIKRIMVVKVGAEPRVYAGDEQGRITAW---ARPSPG-AAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITKDNG--------------GHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIA-AFDPTPGTSALLLVGYEDGTIAVRNF------PEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDSYFLSAGEDGTM 242
            ++HA+R+  + V+  G + +V +G   G I  W   A  + G   F     L GHAR +T L    +  +LWSSS DG+IRIW+  +  C+H IT                  GH+  V  L I   +  GT   ++++ S DG +  +  + G        G GV  IA A D     + +LL+G E G I VRN       P F L   +      VGH  PV AL     PS   S F S G DG +
Sbjct:   20 YSHATRVSALNVI--GGQ-KVISGSRDGCIRLWTFEASSNQGKGGFVLSKTLAGHAREVTGLA--VAENVLWSSSIDGSIRIWDLASGNCQHAITNSGTNAQQSGQPPAGGGQGHKDAVTCL-IPFPSPSGT---FILTSSLDGDIKAWNGSTGQCVASESHGEGVVTIAMAADQK--NNQVLLIGLESGNIMVRNLLQTPNMPAFTLIMMLS-LQYSVGHRGPVKALA--QGPS---STFYSGGGDGKV 252          
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: A0A7S0CBB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBB5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.320e-7
Identity = 51/161 (31.68%), Postives = 72/161 (44.72%), Query Frame = 0
Query:   18 FAHASRIKRIMVVKVGAEPRVYAGDEQGRITAW---------------ARPSPGAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTIT------------------KDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTM 145
            +AHA  +  ++V K   +  V +G + G I  W               A  SP + F  L  L GHAR IT LV   +  M+WSSS D TIR+W+  T  C+H IT                  +   GH   V +L + +S  EG   E+++S S DG +
Sbjct:    1 YAHAMGVSSLLVTK---DMVVVSGSKDGTIRIWKFTTTNPAVATPGAVAPASPASEFLLLNTLFGHAREITGLV-LINMSMIWSSSTDYTIRLWDANTGQCQHLITSAEEKTPPPGGNMLAPADRAKKGHTHAVTSLLVWKS--EG--GEFILSSSLDGKV 153          
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: K4AKC3_SETIT (C3H1-type domain-containing protein n=2 Tax=Setaria TaxID=4554 RepID=K4AKC3_SETIT)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-5
Identity = 55/225 (24.44%), Postives = 91/225 (40.44%), Query Frame = 0
Query:   56 GAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITKDNG--------------GHEGPVAALAIG-------QSAAEGTLA--------EYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSA----LLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDSYFLSAGEDGTMMCWNV 247
            G  F  +AQL+GHA+A+T +     +  L+S S DGT+R+W+  T  C H      G              G  G V AL  G       +  A  TL         E++ +G++DG + +++     +    +C   V+A    +    + A     L  G  DG+I   +         +        H+  V+ALL +      + + LS+ +DGT+  W  
Sbjct:  108 GDGFRGVAQLKGHAKAVTGVAVPEGSDKLFSGSMDGTVRVWDGSTGQCVHVAPMQEGEVASLVSVGPWVVVGVRGAVKALHTGTGKELLLRGPAASTLVTALLVEDDEHLFAGTEDGVIYMWR-----MNQAQQCLDEVAAFRGHEKAVASLAQGKGTLNTGSADGSIRAWDLESRRCVCTL------TAHASAVIALLCW------EQFLLSSSDDGTVKVWRA 315          
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Match: A0A2T7CHN6_9POAL (Uncharacterized protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7CHN6_9POAL)

HSP 1 Score: 54.3 bits (129), Expect = 8.040e-5
Identity = 55/213 (25.82%), Postives = 89/213 (41.78%), Query Frame = 0
Query:   56 GAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACEHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTG-VSAIAAFDPTPGTSALLLVGYEDGTIAV-------RNFPEFALAFEIHPTSL-------------YVGHSKPVLALLPFNNPSIDDSYFLSAGEDGTMMCWNV 247
            G  F  +AQL+GHA+A+T + +   +  L+S S DGT+R+W+  T  C H         EG VA+LA        ++  +V+ G +     +       L  +    +  V+A+   D        L  G EDG I +       ++F E A AF  H  ++                H+    ALL +      + + LS+ +DGT+  W  
Sbjct:  187 GDGFCGVAQLKGHAKAVTGVATPEVSDKLFSGSMDGTVRVWDCNTGQCVHVAPMQ----EGEVASLA--------SIDPWVVVGVRGAVKALHTGTGKELRLRGPAASMLVTALLVEDDEH-----LFAGTEDGVIYMWRMNRSRQSFDEVA-AFRGHEKAVAAWDLESRRCVCTLAAHAAAATALLCW------EQFLLSSSDDGTVKVWRA 375          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9694.21329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LJM7_ECTSI1.850e-17597.28C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YKE1_9STRA4.030e-3337.66WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A6U5LIP5_9STRA2.550e-1632.50Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3HF87_9STRA5.940e-1429.58Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7R9WQC1_9STRA3.600e-1332.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0CBB5_9STRA6.320e-731.68Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
K4AKC3_SETIT1.280e-524.44C3H1-type domain-containing protein n=2 Tax=Setari... [more]
A0A2T7CHN6_9POAL8.040e-525.82Uncharacterized protein n=1 Tax=Panicum hallii var... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 203..246
e-value: 1.5
score: 16.0
coord: 100..149
e-value: 0.63
score: 18.3
coord: 8..51
e-value: 430.0
score: 0.4
coord: 58..97
e-value: 2.8E-5
score: 33.6
coord: 152..194
e-value: 210.0
score: 2.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 62..97
e-value: 5.9E-4
score: 20.6
coord: 209..246
e-value: 0.13
score: 13.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 65..106
score: 13.516
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 5..256
e-value: 2.6E-30
score: 107.3
NoneNo IPR availablePANTHERPTHR44489FAMILY NOT NAMEDcoord: 15..251
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 84..98
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 65..255
score: 16.137
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 7..251

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9694contigEcto-sp13_S_contig9694:1627..5812 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9694.21329.1mRNA_Ecto-sp13_S_contig9694.21329.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9694 567..5818 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9694.21329.1 ID=prot_Ecto-sp13_S_contig9694.21329.1|Name=mRNA_Ecto-sp13_S_contig9694.21329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
MDLTSGSTQEVVSSVTGFAHASRIKRIMVVKVGAEPRVYAGDEQGRITAW
ARPSPGAAFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGT
NACEHTITKDNGGHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQA
ADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFAL
AFEIHPTSLYVGHSKPVLALLPFNNPSIDDSYFLSAGEDGTMMCWNVHKL
TDPSPAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam