prot_Ecto-sp13_S_contig969.21325.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig969.21325.1
Unique Nameprot_Ecto-sp13_S_contig969.21325.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length421
Homology
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A6H5K089_9PHAE (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K089_9PHAE)

HSP 1 Score: 681 bits (1757), Expect = 1.250e-242
Identity = 389/406 (95.81%), Postives = 397/406 (97.78%), Query Frame = 0
Query:    1 MKWPLAAVLVGTARSPATGLHVNLIPMRSKTSVAAAAGVEQSSRITAYRFSRPSRHRVAAARASAVAGLGGAADGVESSLQYLTQPGEDDEDEGEGAFFSAEESLPPTTPPAPARAASAQPAATEDSNTNAVISTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXX-SLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK 405
            MKWPLAAVLVGTARSPATG HVN IP+RSKT+VAAAAGVEQSSR+TAYR SRPSRHRVAAARASAVAGLGGAADGVESSLQ LTQPGEDDEDE +GAFFSAEESLPPT+ PAPARAA A+PAATED NTNAV+STVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXX SLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLM+HMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK
Sbjct:    1 MKWPLAAVLVGTARSPATGFHVNPIPVRSKTTVAAAAGVEQSSRMTAYRVSRPSRHRVAAARASAVAGLGGAADGVESSLQRLTQPGEDDEDEDKGAFFSAEESLPPTSAPAPARAAPARPAATEDGNTNAVVSTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMYHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK 406          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A835YI41_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI41_9STRA)

HSP 1 Score: 187 bits (476), Expect = 6.570e-51
Identity = 122/307 (39.74%), Postives = 162/307 (52.77%), Query Frame = 0
Query:  137 VSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHG------------DPGFDSV----VDAPLYRRSSGKVGAVEPWE----------AEEFRAKEAQTRVRNVATAR-------------GLSLCRADILTGRMHQVRVHL 404
            V  ED  APIDW+LSR+LP  SRRF+RK L  G+V++DGR  KR +RV+ G  I+V                           S   P +  +L VV+ED+H+ VV KP G++ QP A+ PRGT+L+G++HHMV  G+   G +    AA  L QG+V RLD+ TSGI++VAK L ASS LSA+F+  KV K YLAV  G            D G D      +DAPLY+R+SGK+    P +          A     K A TRV+ +  +              GL   + +I TGR HQ+R HL
Sbjct:   10 VEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAA----------------AADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEV---AAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHL 297          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A7S3XRN0_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRN0_HETAK)

HSP 1 Score: 177 bits (450), Expect = 5.440e-48
Identity = 102/277 (36.82%), Postives = 159/277 (57.40%), Query Frame = 0
Query:  133 ISTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWE----AEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK 405
            +S  V  E+N AP+DW L+   PQ SRR++RK ++ G+VKV+G+ V+RF +++ G  + +++                          +   + L  L V+FEDD L  V+KPAG++C P  +   GTVL+GL+HH +++ Q        A +  TLS+GIV RLDK TSG+M+ AK   A+ KLS  F   +  K+YL VC+G     +VV+ P+YR  +GK+  +   +      E R K++++ V+ +   +GLSL   +++TGRMHQ R+HLK
Sbjct:   58 VSAEVDSENNGAPLDWYLAHSFPQKSRRYFRKKIQDGEVKVNGKTVRRFAKLRTGQVLDLEI--------------------EDFAKEIEGAENLS-LSVLFEDDDLVAVLKPAGVVCYPVDSQKSGTVLNGLLHHFLETEQ-----QVFANSIETLSKGIVHRLDKDTSGVMIFAKNQKAAKKLSQSFESRETVKRYLGVCYGHVEPKTVVEEPVYRTKNGKMAVLSKKQDTSVISESRVKDSKSVVKCLMHRQGLSLVEVELITGRMHQARLHLK 308          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A7S2USK5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.260e-33
Identity = 113/345 (32.75%), Postives = 164/345 (47.54%), Query Frame = 0
Query:  126 DSNTNAVISTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMV---------QSGQLKEGADTMAAAANT---------------------------------LSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGD--PGFDSVVDAPLYRRSSGKVGAVEP----W------------------EAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHL 404
            DS+ + V + VV  +D+  P+D VL+R+ P+ SRRF+RK ++AG VKVD ++VKR  ++++G  +S                              + P+ L  L V+FED+HL  V KP GMI  P  +   GTVLHG++H +          ++    EG    A   +T                                 L+QG+V RLD  TSG+++VAK   A+  ++  F++  VKK+Y+AV  GD  PG   +   PL R SSGK+   +     W                  EA+   A+ A T VR +AT   LS+  A+ILTGRMHQ+RVHL
Sbjct:   46 DSHQSDVQTFVVGKKDDDWPLDIVLTRQYPEKSRRFFRKIIQAGRVKVDEKEVKRLSKIRKGQLVSAQF--------------------KPDEKPSMEPEDLG-LEVLFEDEHLIAVAKPPGMIVHPVESCETGTVLHGVLHLLTTPREKVTPKETAAQPEGNQENAQEEDTKVERKPEKNAKKGGPDPWDPAKPLKLTARLCTGLAQGVVHRLDSDTSGVVLVAKNAPAARGMAKQFQQRSVKKKYMAVVVGDLGPGVHHLT-LPLLRTSSGKMAVFQEAQPEWGEEMAGGDMLTGDFTDVGEADAKGARGATTIVRRLATDGQLSVVGAEILTGRMHQLRVHL 368          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A356IXW4_9BACT (Pseudouridine synthase n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A356IXW4_9BACT)

HSP 1 Score: 128 bits (321), Expect = 3.660e-30
Identity = 94/271 (34.69%), Postives = 140/271 (51.66%), Query Frame = 0
Query:  137 VSDEDNKAPIDWVLSRRLPQ-HSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDS-VVDAPLYRRS-SGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHL 404
            V  E ++  +D  L+R LP   SR F +K LEAG V V+  KVK   +V+ G  I VD+ ++                        + P+ +P L + +ED+ L VV KPAGM+  P      GT+++ L+ H  Q       AD   A    +  GIV RLDK+TSG+M+  K     ++L+  F+K KVKK+Y+A+  G+  FD  ++DAPL R S    +  V+  +A    AK+A T  R +   +G++L      TGR HQ+RVH+
Sbjct:    8 VEPEHDRERLDVYLTRALPDIPSRSFVQKLLEAGAVLVNKEKVKAHYKVRAGDNIDVDVAQELLDPHP------------------IAPENIP-LDIFYEDEFLLVVNKPAGMLVHPAQGVYSGTLVNALLFHCRQLSDFPPKADPPPAGNIAMRPGIVHRLDKETSGLMIAVKDNQTHAQLARQFQKHKVKKRYIALVEGEVEFDEGIIDAPLGRHSIHHDLRGVQYDDA----AKDAVTFYRVIKRHKGVTLISLFPKTGRTHQLRVHM 255          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A7S3XXK7_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK)

HSP 1 Score: 130 bits (326), Expect = 4.410e-30
Identity = 91/272 (33.46%), Postives = 135/272 (49.63%), Query Frame = 0
Query:  136 VVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAA-NTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYR--RSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHL 404
            +V +E NK  +D  LS   P+ SR ++    + G V+V GR VK+  +++ G  +SV                               P+ +P L +++ED+HL  V KP GM+  P   +  GT  + L  HM   G+     D  AA   + L  GIV RLDK TSG+++ +K     +KLS +F   K+KK YLAVC G+PG D  ++  + R  ++  K+  +   +    RA+ A T V  ++    LSL R  I TGR HQ+RVHL
Sbjct:   70 IVGEEYNKKRLDAFLSDEFPEQSRSYFGSLCQQGLVRVGGRAVKKSEKLRAGQEVSVAF--------------------LPTAEMAAEPEDIP-LDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGE-----DYRAAGGGDALRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRKIKKTYLAVCVGNPGQDVKIENLIARHPKNRQKMCVIHETQEGAARARTAVTLVDGLSFDSQLSLARVQIETGRTHQIRVHL 315          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A6M1ZVU5_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZVU5_9BACT)

HSP 1 Score: 126 bits (316), Expect = 1.550e-29
Identity = 94/270 (34.81%), Postives = 144/270 (53.33%), Query Frame = 0
Query:  136 VVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK 405
            +V++E+ K  +D +L+ R P+ SR ++++ ++   V V+G++VK+ I ++    I +                           SL  P+ +P L +++ED+ L V+ KPAG++  P A    GT+++GL+ H  Q   LK        AA +L  GIV RLDK TSG++V AK   A  KLS LF   +V K+YLA+C  +PG + ++D P+ R     V   E    +E R +EAQT   ++     LSL R    TGR HQ+RVHLK
Sbjct:    7 IVTEEEEKLRLDTLLATRFPELSRTYFQQLIDRQLVLVNGKQVKKRIHLRSADEIEIQF-------------------VLSPEISLE-PEEIP-LDILYEDEELLVINKPAGLVVHPGAGHSSGTLVNGLLFHCKQ---LK--------AAESLRPGIVHRLDKGTSGLLVAAKNEEAQMKLSTLFANRQVHKEYLAICISNPG-NRLIDQPIGRHP---VRRKEMTILKE-RGREAQTETHSLVHNGELSLVRLIPKTGRTHQLRVHLK 239          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A1F8JRD2_9BACT (Pseudouridine synthase n=2 Tax=Chlamydiae TaxID=204428 RepID=A0A1F8JRD2_9BACT)

HSP 1 Score: 124 bits (311), Expect = 8.440e-29
Identity = 89/271 (32.84%), Postives = 137/271 (50.55%), Query Frame = 0
Query:  136 VVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRS-SGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK 405
            +++ ED    +D +L+     +SR +++  +EAG V ++G  VK+  + + G  +S+ L                           +F      L ++FED+HL  + KPAGM+  P    P  T ++ L+HH       KE  DT+ A    L  GIV RLDK+TSG+++ AK+ AA  ++ +LF + KVKK Y+A+C G+P  D  + APL R     K  AV P        KEA T +R +++    S      LTGR HQ+RVH++
Sbjct:    8 LITQEDAGRRLDLLLASHYSSYSRSYFQYLMEAGAVLLNGSPVKKRTKPRLGDEVSLSL---------------IPLPEMRLEPEAIF------LDILFEDEHLIAINKPAGMVVHPAPGHPSHTFVNALLHHC------KELPDTLGAP---LRPGIVHRLDKETSGVLLAAKSQAAHREIVSLFSERKVKKTYVAICLGNPK-DQTIRAPLLRHPVRRKEIAVAP------SGKEAVTSIRVLSSQGNYSFVEIAPLTGRTHQIRVHMR 241          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A6M2A1C5_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2A1C5_9BACT)

HSP 1 Score: 123 bits (308), Expect = 2.150e-28
Identity = 90/273 (32.97%), Postives = 133/273 (48.72%), Query Frame = 0
Query:  134 STVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRS-SGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK 405
            S VVS ED    +D  L++  P HSR +++  ++   V ++G  +K+  R+  G  + V                             V P+ +P L +++ED+ + VV KP+GM+  P   +  GT  + L+HH  Q   LK+           L  GIV RLDK TSGI++ AK LAA  KL   F    ++KQYL +C G P  +    AP+ R   + K   + P        KEA+T    +   +GLSL +A ++TGR HQ+RVHLK
Sbjct:    4 SLVVSKEDLGERVDKFLTQYFPNHSRTYFQFLIDEESVLLNGHPIKKQHRLVEGDEVEVSFQTLPMLD--------------------VKPEAIP-LEILYEDESIIVVNKPSGMVVHPAPGSYSGTFANALLHHCKQ---LKK------EEFENLRPGIVHRLDKDTSGILIAAKNLAAHQKLVEQFASRSIEKQYLVICLGVPK-EGECSAPIKRHPINRKQMTINP------EGKEARTHFTVLGRRKGLSLVQAKLITGRTHQIRVHLK 239          
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Match: A0A7X5Q4J1_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q4J1_9BACT)

HSP 1 Score: 121 bits (304), Expect = 8.060e-28
Identity = 88/270 (32.59%), Postives = 134/270 (49.63%), Query Frame = 0
Query:  136 VVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLK 405
            +VS+E+    +D +L+++ P+HSR +++  ++   V ++G  VK+  R   G  I++                             V P+ +P L +V+ED H+  V KP GM+  P   A  GT  + LM+H           +           GIV RLDK+TSG+++ AKTL A  KL+  F K +V+K+YLA+C G P  +    AP+ R    +       E      KEA TR + +A   GLSL  A+++TGR HQ+RVHLK
Sbjct:    6 IVSEENLGLRLDKLLAQQFPEHSRSYFQYLIDEKHVLLNGHPVKKQHRPLAGDEIAIAF--------------------QDVPNLDVKPEAIP-LDIVYEDAHIIAVNKPVGMVVHPAPGAYTGTFANALMYHC---------KELNPDEFEKTRPGIVHRLDKETSGLLIGAKTLEAHKKLTEAFSKREVQKRYLAICCGIPK-EGECSAPIKRHPIKRKQMTVSAEG-----KEALTRFKILARKDGLSLIEAELVTGRTHQIRVHLK 239          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig969.21325.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K089_9PHAE1.250e-24295.81S4 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YI41_9STRA6.570e-5139.74Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A7S3XRN0_HETAK5.440e-4836.82Pseudouridine synthase n=1 Tax=Heterosigma akashiw... [more]
A0A7S2USK5_9STRA1.260e-3332.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A356IXW4_9BACT3.660e-3034.69Pseudouridine synthase n=1 Tax=Candidatus Omnitrop... [more]
A0A7S3XXK7_HETAK4.410e-3033.46Pseudouridine synthase n=1 Tax=Heterosigma akashiw... [more]
A0A6M1ZVU5_9BACT1.550e-2934.81Pseudouridine synthase n=1 Tax=Chlamydiae bacteriu... [more]
A0A1F8JRD2_9BACT8.440e-2932.84Pseudouridine synthase n=2 Tax=Chlamydiae TaxID=20... [more]
A0A6M2A1C5_9BACT2.150e-2832.97Pseudouridine synthase n=1 Tax=Chlamydiae bacteriu... [more]
A0A7X5Q4J1_9BACT8.060e-2832.59Pseudouridine synthase n=1 Tax=Chlamydiae bacteriu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 144..200
e-value: 0.0024
score: 27.1
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 146..188
e-value: 3.1E-5
score: 23.6
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 144..203
score: 10.259
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 238..404
e-value: 1.1E-25
score: 90.6
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 132..200
e-value: 8.4E-9
score: 36.8
NoneNo IPR availableGENE3D3.30.2350.10coord: 230..409
e-value: 3.0E-41
score: 143.2
NoneNo IPR availablePANTHERPTHR21600:SF34RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTICcoord: 142..405
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 142..405
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..420
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 146..201
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 294..308
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 227..405

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig969contigEcto-sp13_S_contig969:17372..19721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig969.21325.1mRNA_Ecto-sp13_S_contig969.21325.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig969 17213..19938 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig969.21325.1 ID=prot_Ecto-sp13_S_contig969.21325.1|Name=mRNA_Ecto-sp13_S_contig969.21325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=421bp
MKWPLAAVLVGTARSPATGLHVNLIPMRSKTSVAAAAGVEQSSRITAYRF
SRPSRHRVAAARASAVAGLGGAADGVESSLQYLTQPGEDDEDEGEGAFFS
AEESLPPTTPPAPARAASAQPAATEDSNTNAVISTVVSDEDNKAPIDWVL
SRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQ
QQQQQGASAVAAATTTPPPSLVFPQRLPRLRVVFEDDHLFVVMKPAGMIC
QPCAAAPRGTVLHGLMHHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQ
TSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYR
RSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQV
RVHLKVCLLLSGRGREEETA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR006145PsdUridine_synth_RsuA/RluA
IPR036986S4_RNA-bd_sf
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf