prot_Ecto-sp13_S_contig9665.21298.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9665.21298.1
Unique Nameprot_Ecto-sp13_S_contig9665.21298.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length123
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9665.21298.1 vs. uniprot
Match: D8LS14_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS14_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 7.530e-77
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 
Query:    1 MSASSGDDSSSGSGSGLSGSGGKEWVDDGRDSLPFVVYDAAPPPRKVGVANLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRVAKERVVSRLVYGDSGKMPPPPS 122
            MSASSGDDSSSGSGSGLSGSGGKEWVDDGRDSLPFVVYDAAPPPRKVGVANLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRVAKERVVSRLVYGDSGK PPPPS
Sbjct:   53 MSASSGDDSSSGSGSGLSGSGGKEWVDDGRDSLPFVVYDAAPPPRKVGVANLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRVAKERVVSRLVYGDSGKAPPPPS 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9665.21298.1 vs. uniprot
Match: A0A836CEA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.320e-17
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0 
Query:   28 DGRDSLPFVVYDAAPPPRKVGVANLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRVAKERVVSRL 109
            D RD LP+ VY+A+PP RK+G   L P TG GD + HG K Y V +VS HY++EGG F + RK   A EL R A ER+ +R+
Sbjct:   81 DDRDRLPYDVYNASPPRRKLGRFALDPTTGCGDMIQHGMKSYVVGKVSCHYRFEGGAFKMFRKEADATELLRAAAERIAARM 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9665.21298.1 vs. uniprot
Match: A0A836CD29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD29_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.950e-8
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:   33 LPFVVYDAAPPPRKVGVANLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRVAKERVVSRL 109
            LP+ VY+A+PP RK+G   L   TG GD + HG K Y V R      +EGG F + RK   A EL R A ER+V+R+
Sbjct:  165 LPYDVYNASPPRRKLGRFALDLTTGCGDMILHGMKSYVVGR------FEGGAFKMFRKEADATELLRAAAERIVARM 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9665.21298.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS14_ECTSI7.530e-7799.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEA4_9STRA4.320e-1751.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD29_9STRA1.950e-846.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9665contigEcto-sp13_S_contig9665:4747..6207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9665.21298.1mRNA_Ecto-sp13_S_contig9665.21298.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9665 4747..6216 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9665.21298.1 ID=prot_Ecto-sp13_S_contig9665.21298.1|Name=mRNA_Ecto-sp13_S_contig9665.21298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MSASSGDDSSSGSGSGLSGSGGKEWVDDGRDSLPFVVYDAAPPPRKVGVA
NLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRV
AKERVVSRLVYGDSGKMPPPPS*
back to top