prot_Ecto-sp13_S_contig9647.21274.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9647.21274.1
Unique Nameprot_Ecto-sp13_S_contig9647.21274.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length286
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9647.21274.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 479 bits (1234), Expect = 7.840e-152
Identity = 251/286 (87.76%), Postives = 263/286 (91.96%), Query Frame = 0 
Query:    1 PSSSLPGGAAKCRVGFGMIRSLTGPDGNDAGGRPVGVKPGEDMETTVLGSGGSKVSQWVMDRLKMGIGAGKRQANGRDKAEGNQQYLCLDQTHVSGAVCISGTRFLLTIAQLVNGSMSVSGHDPLTCQTAALTLDLPALKTLCLSEGLQTASTGNPIGSVVATHLIRNAPRLLEIQSVGGVDTMAVADQNQGDDESIASSTSSGIALSDGYRLESTGGSPRQQQAVHTDGRSNRPVKVAGMTSNRATLDRETTSIVTAGSEPGLVACRIRRLEAGRRRAEGIRRAA 286
            PSSS PGGAAKCRV FGMIR LTGPDGNDAGGR VGVKPGED+ET VLGSGGSKVSQWVM RLKM I  G+RQ NGRDKA+G+QQYLCLD+THVSGAVCISGTRFLLTIAQLVNGS+SVSGHDPLTCQTAALTLDLPALKTLCLSEGL TASTGNPI SVVA HL+RNAPRLLE+QSVGG+DTMAVA QNQGDD S+ASSTSSGIAL DGYRLESTGG PRQQQA HTDG SNRP KVAG TSNRATLD +TTSI+TA SEPGLVACRIRRLEAGRRRAEGIRRAA
Sbjct: 2789 PSSSSPGGAAKCRVDFGMIRLLTGPDGNDAGGRAVGVKPGEDVETAVLGSGGSKVSQWVMGRLKMDIRGGERQENGRDKADGSQQYLCLDETHVSGAVCISGTRFLLTIAQLVNGSISVSGHDPLTCQTAALTLDLPALKTLCLSEGLPTASTGNPIRSVVAKHLMRNAPRLLEVQSVGGIDTMAVAGQNQGDDVSVASSTSSGIALPDGYRLESTGGLPRQQQAGHTDGGSNRPAKVAGRTSNRATLDPKTTSILTAASEPGLVACRIRRLEAGRRRAEGIRRAA 3074
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BLAST of mRNA_Ecto-sp13_S_contig9647.21274.1 vs. uniprot
Match: D8LLD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD5_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 6.260e-52
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 0 
Query:    3 SSLPGGAAKCRVGFGMIRSLTGPDGNDAGGRPVGVKPGEDMETTVLGSGGSKVSQWVMDRLKMGIGAGKRQANGRDKAEGNQQYLCLDQTHVSGAVCISGTR 104
            SSLPGGAAKCRVGFGMIR LTGP+GNDAGGRPVGVKPGED+ET VLGSGGSKVSQWVM RLK+    G+RQ NGRD A+GNQQYLCLD+THVSGAVCISGTR
Sbjct:  215 SSLPGGAAKCRVGFGMIRLLTGPEGNDAGGRPVGVKPGEDVETAVLGSGGSKVSQWVMGRLKIDTRGGERQENGRDNADGNQQYLCLDETHVSGAVCISGTR 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9647.21274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP29_9PHAE7.840e-15287.76AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
D8LLD5_ECTSI6.260e-5285.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9647contigEcto-sp13_S_contig9647:1418..3773 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9647.21274.1mRNA_Ecto-sp13_S_contig9647.21274.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9647 1418..3773 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9647.21274.1 ID=prot_Ecto-sp13_S_contig9647.21274.1|Name=mRNA_Ecto-sp13_S_contig9647.21274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=286bp
PSSSLPGGAAKCRVGFGMIRSLTGPDGNDAGGRPVGVKPGEDMETTVLGS
GGSKVSQWVMDRLKMGIGAGKRQANGRDKAEGNQQYLCLDQTHVSGAVCI
SGTRFLLTIAQLVNGSMSVSGHDPLTCQTAALTLDLPALKTLCLSEGLQT
ASTGNPIGSVVATHLIRNAPRLLEIQSVGGVDTMAVADQNQGDDESIASS
TSSGIALSDGYRLESTGGSPRQQQAVHTDGRSNRPVKVAGMTSNRATLDR
ETTSIVTAGSEPGLVACRIRRLEAGRRRAEGIRRAA
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