prot_Ecto-sp13_S_contig9640.21269.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9640.21269.1
Unique Nameprot_Ecto-sp13_S_contig9640.21269.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length486
Homology
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 470 bits (1209), Expect = 3.220e-145
Identity = 387/505 (76.63%), Postives = 394/505 (78.02%), Query Frame = 0
Query:    1 MSARRASGARHRSAAGGSAGGEARGGGV-RSPLADDFDDDGELDLSASLWFQTLDKILSAKGAACRSGPPSSLASTAPPRVGAAAA----AEPVASVPGAA--AAAPGRGREAAGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHLILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIAVADGPTGARNASAXXXXXXXXGSLPEQRGGVFSVGGAGGGRSLAPHHPPLPSGLLGAVGSGVISVSSGGVAVVEHFGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXX-----------DASASLWRLRAARRRRQARGDKMRSLARWSAGEDTGPVRGDGGDRARGTIGHVPVMTRGGSKVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEG--QSRGRQALGWGSALQARAALALPASFLTKRT 485
            MSARRASGARHRS AG             RSPLADDFDDDGELDLSASLWFQTLDKILSAKGAACRSGP                     A+P ASVPG    A APGRGREAAGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRH+ILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIA            AXXXXXXXX                   RSLAPHHPP+PSGLLGA+GSGVI VSS GVAVVEH GRG XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX           DASASLWRLRAARRRRQARGDKMRSLARWSAGEDTGP+RGDGG+RARGTIGH+PVMTRGGSKVSG   XXXXXXX             XXXXXXXXXXXXXXXXXXXXXXX      QSRGRQ LGWGSALQARAALALPASFLTKRT
Sbjct: 2116 MSARRASGARHRSTAGXXXXXXXXXXXXXRSPLADDFDDDGELDLSASLWFQTLDKILSAKGAACRSGPXXXXXXXXXXXXXXXXXXXXXADPAASVPGXXXXAVAPGRGREAAGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIA------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLAPHHPPVPSGLLGALGSGVIRVSSAGVAVVEHLGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASASLWRLRAARRRRQARGDKMRSLARWSAGEDTGPIRGDGGERARGTIGHIPVMTRGGSKVSGRSGXXXXXXXLGRDENGRVHQRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRGRQPLGWGSALQARAALALPASFLTKRT 2608          
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Match: D8LRX1_ECTSI (Vps8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX1_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 4.400e-126
Identity = 307/383 (80.16%), Postives = 312/383 (81.46%), Query Frame = 0
Query:  117 MGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHLILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIAVADGPTGARNASAXXXXXXXXGSLPEQRGGVFSVGGAGGGR--------SLAPHHPPLPSGLLGAVGSGVISVSSGGVAVVEHFGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXD---ASASLWRLRAARRRRQARGDKMRSLARWSAGEDTGPVRGDGGDRARGTIGHVPVMTRGGSKVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEG---QSRGRQALGWGSALQARAALALPASFLTKRT 485
            MGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRH+ILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIA ADGPT  RNASAXXXXXXXX                            SLA HHPP+PSGLLGAVGSGVISVSSGGVAVVEH GRGXXXXXXXXXX    XXXXXXXXXXXXX XXXXXXXXXXXXXXX    ASASLWRLRAARRRRQA+GDKMRSLARWSAGEDTGP RGDGGDRARGTIGH+PVM RGG+KVSG      XXXXXXX             XXXXXXXXXXXXXXXXXXXX       QSRGRQALGWGSALQARAALALPASFL KRT
Sbjct:    1 MGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIAAADGPTRTRNASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLALHHPPVPSGLLGAVGSGVISVSSGGVAVVEHLGRGXXXXXXXXXXNDEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASASLWRLRAARRRRQAKGDKMRSLARWSAGEDTGPTRGDGGDRARGTIGHIPVMNRGGTKVSGRNGGGVXXXXXXXDENGRVHQRGGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRGRQALGWGSALQARAALALPASFLAKRT 383          
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Match: A0A7S2GX04_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GX04_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.280e-18
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 0
Query:  109 ELPQTAAVMGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHLILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRV 203
            ELPQ   ++  VL  ++QRTL  M+ +VPLP IV+K+  DH+G  LGE R ++L+MLDTY+Y+T I+RTA SL+   LR + + R  LK +GV +
Sbjct:  415 ELPQHQTILEAVLTEMIQRTLDKMSAFVPLPRIVRKITDDHSGMELGELRDILLSMLDTYTYETNIYRTAVSLVATDLRRLCKRRQRLKCSGVSI 509          
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Match: A0A836CF74_9STRA (Golgi CORVET complex core vacuolar protein 8-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF74_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.730e-14
Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  122 DALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHLILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIA 217
            D LLQR L  M GYVPLPAIV KV+SDHA + LGEF+ LI +ML   S +T ++R AA LLF   +     R  L  AGVRV A+ G  L P  +A
Sbjct: 1073 DILLQRLLEGMTGYVPLPAIVGKVLSDHAQAPLGEFKGLIQSMLVACSRETDVYRAAAVLLFGCAQRARAARRRLARAGVRVCAIDGRGLDPDTLA 1168          
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Match: A0A388JYZ1_CHABU (Vps8 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JYZ1_CHABU)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-5
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 0
Query:  120 VLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHLILAMLDTYSYDTAIHRTAASL----LFESLRTVVRER 193
            +L  ++ + +S M GYVPLP ++ K+VS H     GEF+  IL +L TY ++ +I +TA +L     F S+  + R R
Sbjct: 2721 LLVGMMGKVMSGMVGYVPLPVLLSKIVSQHGSDQFGEFKATILGLLGTYGFERSILKTAKNLQDGDAFASMHALKRGR 2798          
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Match: A0A443PFM0_9MAGN (Vacuolar protein sorting-associated protein 8 isoform X2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PFM0_9MAGN)

HSP 1 Score: 57.8 bits (138), Expect = 4.680e-5
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0
Query:  120 VLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHLILAMLDTYSYDTAIHRTAASLL 182
            +L   +Q  +  M GYVPLP I+ K++SD+     G+F+  IL ML TY Y+  I  TA SL+
Sbjct: 1723 LLSRFIQEIVEGMVGYVPLPTIMAKLLSDNGNQEFGDFKLTILGMLGTYGYERTILDTAKSLI 1785          
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Match: A0A2I0AWR9_9ASPA (RING-type domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AWR9_9ASPA)

HSP 1 Score: 57.0 bits (136), Expect = 8.070e-5
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 0
Query:  110 LPQTAAVMGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHLILAMLDTYSYDTAIHRTAASLL 182
            L  +A ++  +   L+   +  M GY+PLPA++ K++SD+     G+F+  IL ML TY+Y+  I  TA SL+
Sbjct: 1690 LKSSAHILRRLFSQLIGEIIEGMTGYLPLPAVMAKLLSDNGNQEFGDFKFTILKMLGTYNYERRILDTAKSLI 1762          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9640.21269.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE3.220e-14576.63Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX1_ECTSI4.400e-12680.16Vps8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A7S2GX04_9STRA8.280e-1848.42Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A836CF74_9STRA2.730e-1452.08Golgi CORVET complex core vacuolar protein 8-domai... [more]
A0A388JYZ1_CHABU1.240e-537.18Vps8 domain-containing protein n=1 Tax=Chara braun... [more]
A0A443PFM0_9MAGN4.680e-542.86Vacuolar protein sorting-associated protein 8 isof... [more]
A0A2I0AWR9_9ASPA8.070e-536.99RING-type domain-containing protein n=1 Tax=Aposta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12616VACUOLAR PROTEIN SORTING VPS41coord: 41..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9640contigEcto-sp13_S_contig9640:1727..4495 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9640.21269.1mRNA_Ecto-sp13_S_contig9640.21269.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9640 1727..4495 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9640.21269.1 ID=prot_Ecto-sp13_S_contig9640.21269.1|Name=mRNA_Ecto-sp13_S_contig9640.21269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=486bp
MSARRASGARHRSAAGGSAGGEARGGGVRSPLADDFDDDGELDLSASLWF
QTLDKILSAKGAACRSGPPSSLASTAPPRVGAAAAAEPVASVPGAAAAAP
GRGREAAGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHA
GSSLGEFRHLILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAG
VRVSAVGGFDLHPPRIAVADGPTGARNASAAAAAASAAGSLPEQRGGVFS
VGGAGGGRSLAPHHPPLPSGLLGAVGSGVISVSSGGVAVVEHFGRGGGGG
DAGSRNDEGDGDGDDDGSSGAGARRAASSPPPAAAVPQQDASASLWRLRA
ARRRRQARGDKMRSLARWSAGEDTGPVRGDGGDRARGTIGHVPVMTRGGS
KVSGGGGGGGGVLGGDENGRVHQRGGQGAAAAAAAGGAAANQYRREAAAA
GEEGQSRGRQALGWGSALQARAALALPASFLTKRT*
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