prot_Ecto-sp13_S_contig9631.21257.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9631.21257.1
Unique Nameprot_Ecto-sp13_S_contig9631.21257.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length303
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9631.21257.1 vs. uniprot
Match: D8LNC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC0_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 4.040e-132
Identity = 204/236 (86.44%), Postives = 214/236 (90.68%), Query Frame = 0 
Query:   24 MVVASVSAXXXXXPVLYFSVKALRHACKEGGIMSRILANLCRLEPGLSAVREPRDQIEIMEEGLSFPPLSVIQLTFKRLSPLLRRVELRMIRTVKSMYVMLDQTLLGPASSSSKDPMDSMHDACSIVARTVATLGSWGASTAVMSLVNPAKDVTNLFSDRAKRNGYGGMSRGRQTHFVALLHRRATVMEEVIEQALWAGTMPEIPAGLRDVTSIIGLLERDDRINAGSVNGAGRGN 259
            MVVASVSA     PVLYFSVKA RHAC+EGGIMSRILANL RL PGLSA+REPR+ +EIMEEG+SFPPL VIQLTFKRLSP LRRVELRMIRTVKSMYVMLDQTLLGPASSSSK PMDSM+DACS+VARTVATL SW ASTAV+SLVNPAKDVT+LFSDRAKRNGY GMSRGRQTHF ALLH+RA  MEEVIEQALWAGTMPEIP GLRDV SIIGLLERDDRINAG VN AGRGN
Sbjct:    1 MVVASVSAVVVSVPVLYFSVKAFRHACQEGGIMSRILANLRRLAPGLSAIREPRNPMEIMEEGISFPPLRVIQLTFKRLSPQLRRVELRMIRTVKSMYVMLDQTLLGPASSSSKGPMDSMNDACSLVARTVATLVSWDASTAVISLVNPAKDVTDLFSDRAKRNGYDGMSRGRQTHFAALLHQRAIAMEEVIEQALWAGTMPEIPVGLRDVPSIIGLLERDDRINAGRVNDAGRGN 236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9631.21257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNC0_ECTSI4.040e-13286.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..302
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..41
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9631contigEcto-sp13_S_contig9631:3470..5738 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9631.21257.1mRNA_Ecto-sp13_S_contig9631.21257.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9631 3470..5738 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9631.21257.1 ID=prot_Ecto-sp13_S_contig9631.21257.1|Name=mRNA_Ecto-sp13_S_contig9631.21257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
MFSFNDVFAVWAFVKAWIVANLVMVVASVSAVVVSVPVLYFSVKALRHAC
KEGGIMSRILANLCRLEPGLSAVREPRDQIEIMEEGLSFPPLSVIQLTFK
RLSPLLRRVELRMIRTVKSMYVMLDQTLLGPASSSSKDPMDSMHDACSIV
ARTVATLGSWGASTAVMSLVNPAKDVTNLFSDRAKRNGYGGMSRGRQTHF
VALLHRRATVMEEVIEQALWAGTMPEIPAGLRDVTSIIGLLERDDRINAG
SVNGAGRGNVSKGKGEGTVKSGVEFIPYSPPSMIAEPGASHVPDSGIGLS
WQ*
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