prot_Ecto-sp13_S_contig95916.21204.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig95916.21204.1
Unique Nameprot_Ecto-sp13_S_contig95916.21204.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length47
Homology
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI001CE385F7 (VCBS domain-containing protein n=2 Tax=Bradyrhizobium sp. WSM 1704 TaxID=2821404 RepID=UPI001CE385F7)

HSP 1 Score: 60.1 bits (144), Expect = 2.610e-9
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    2 FDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVITQA 47
            FDYLAAGEK+T +Y++  DDQ GGV      + VTGTND PVIT A
Sbjct:  749 FDYLAAGEKLTLTYQIQIDDQQGGVVTVPVTITVTGTNDKPVITSA 794          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI000A278805 (VCBS domain-containing protein n=1 Tax=Kiloniella majae TaxID=1938558 RepID=UPI000A278805)

HSP 1 Score: 57.0 bits (136), Expect = 3.190e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVIT 45
            + DYLAAGE VT +Y +T DD NGG   ++  +++TGTND PVIT
Sbjct: 4644 SIDYLAAGEVVTQTYTVTIDDGNGGTVSQDVTMIITGTNDAPVIT 4688          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI001C2CF3B8 (VCBS domain-containing protein n=1 Tax=Novosphingobium sp. G106 TaxID=2849500 RepID=UPI001C2CF3B8)

HSP 1 Score: 56.6 bits (135), Expect = 4.360e-8
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVI 44
            AFDYLAAG+K+T  Y +T DD +GG   +NF + + GTND PVI
Sbjct:  495 AFDYLAAGQKLTLVYTVTVDDHDGGTNTKNFVIEINGTNDVPVI 538          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI001EE16B0B (VCBS domain-containing protein n=1 Tax=Methylobacterium cerastii TaxID=932741 RepID=UPI001EE16B0B)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-7
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQN-GGVAERNFNVVVTGTNDGPVI 44
            AFD+LAAGEK+T SY +T  DQ+ GG A R   + VTGTND PV+
Sbjct:  911 AFDFLAAGEKLTISYDVTVSDQHTGGTATRPVVITVTGTNDAPVL 955          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI001EE2BC2B (VCBS domain-containing protein n=1 Tax=Methylobacterium cerastii TaxID=932741 RepID=UPI001EE2BC2B)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-7
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQN-GGVAERNFNVVVTGTNDGPVI 44
            AFD+LAAGEK+T SY +T  DQ+ GG A R   + VTGTND PV+
Sbjct:  924 AFDFLAAGEKLTISYDVTVSDQHTGGTATRPVVITVTGTNDAPVL 968          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI001AD9D1F5 (VCBS domain-containing protein n=1 Tax=Rhizobium sp. 16-488-2b TaxID=2819991 RepID=UPI001AD9D1F5)

HSP 1 Score: 53.1 bits (126), Expect = 7.310e-7
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0
Query:    2 FDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVI 44
            FDYLA GEK+T +Y++T  D +GG       +VVTGTND PV+
Sbjct: 1713 FDYLAKGEKLTLTYQVTLSDGHGGADTTTVTIVVTGTNDAPVV 1755          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI001CCCA22F (VCBS domain-containing protein n=1 Tax=Mesorhizobium sp. BH1-1-5 TaxID=2876661 RepID=UPI001CCCA22F)

HSP 1 Score: 52.8 bits (125), Expect = 9.510e-7
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVITQA 47
            AFDYLAAGE +T +Y + ADD +GG    N  + + GTND   IT A
Sbjct:  248 AFDYLAAGEHLTLTYAVKADDGHGGTTTHNVTITIDGTNDAVTITGA 294          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: UPI00177BB56D (VCBS domain-containing protein n=1 Tax=Rhizobium sp. RHZ02 TaxID=2769306 RepID=UPI00177BB56D)

HSP 1 Score: 52.8 bits (125), Expect = 1.000e-6
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVIT 45
            AFDYL  G+ +T +Y +   D  GGV+ +  NVVVTGTND P+++
Sbjct:  661 AFDYLGVGDSLTLTYTVQVSDGAGGVSTQTVNVVVTGTNDAPIVS 705          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: A0A0R3DE31_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=A0A0R3DE31_9BRAD)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVI 44
            +FDYLAAG+ VT +Y++   D +GG   +N  V VTGTND P I
Sbjct:  394 SFDYLAAGQTVTLTYRVQVADNHGGTTSQNVVVTVTGTNDAPTI 437          
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Match: A0A531K9M7_9HYPH (Uncharacterized protein (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A531K9M7_9HYPH)

HSP 1 Score: 49.7 bits (117), Expect = 1.750e-6
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    1 AFDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVI 44
            AFD+LAAGE +T +Y + ADD +GG   +   V +TGTND  +I
Sbjct:   29 AFDFLAAGETLTLTYTIQADDGHGGTDTQTVTVSITGTNDAAII 72          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95916.21204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CE385F72.610e-960.87VCBS domain-containing protein n=2 Tax=Bradyrhizob... [more]
UPI000A2788053.190e-855.56VCBS domain-containing protein n=1 Tax=Kiloniella ... [more]
UPI001C2CF3B84.360e-856.82VCBS domain-containing protein n=1 Tax=Novosphingo... [more]
UPI001EE16B0B2.090e-760.00VCBS domain-containing protein n=1 Tax=Methylobact... [more]
UPI001EE2BC2B2.090e-760.00VCBS domain-containing protein n=1 Tax=Methylobact... [more]
UPI001AD9D1F57.310e-753.49VCBS domain-containing protein n=1 Tax=Rhizobium s... [more]
UPI001CCCA22F9.510e-751.06VCBS domain-containing protein n=1 Tax=Mesorhizobi... [more]
UPI00177BB56D1.000e-648.89VCBS domain-containing protein n=1 Tax=Rhizobium s... [more]
A0A0R3DE31_9BRAD1.370e-652.27Uncharacterized protein n=1 Tax=Bradyrhizobium man... [more]
A0A531K9M7_9HYPH1.750e-650.00Uncharacterized protein (Fragment) n=1 Tax=Mesorhi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010221VCBS repeatTIGRFAMTIGR01965TIGR01965coord: 2..46
e-value: 1.8E-5
score: 22.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig95916contigEcto-sp13_S_contig95916:386..526 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig95916.21204.1mRNA_Ecto-sp13_S_contig95916.21204.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig95916 386..526 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig95916.21204.1 ID=prot_Ecto-sp13_S_contig95916.21204.1|Name=mRNA_Ecto-sp13_S_contig95916.21204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
AFDYLAAGEKVTFSYKLTADDQNGGVAERNFNVVVTGTNDGPVITQA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010221VCBS_rpt