prot_Ecto-sp13_S_contig9573.21185.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9573.21185.1
Unique Nameprot_Ecto-sp13_S_contig9573.21185.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length394
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9573.21185.1 vs. uniprot
Match: A0A6H5JAL8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAL8_9PHAE)

HSP 1 Score: 395 bits (1016), Expect = 2.310e-123
Identity = 312/373 (83.65%), Postives = 319/373 (85.52%), Query Frame = 0 
Query:   34 KSSEALAVEALARTAERTAVAXXXXXXXXXXXVARASPVEKQSGGGKRKEAIEQLEKERGGGLTPSLGAFERAIQALGAARKWAEAVGLMSEVEXXXXXXXXXXXXXXXXXXCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADDATYRKAIKACAMANDPTQVVGVWELFVGKGRIVTDVAAAEVSRVARAMGALGDWKGIIGLLGTRSTAGGGPLPDLDRLS---------YNWLVSAHAQLGDAKAVLTSIEDMGRNGHPADADTYSLAFKAFVKSGGRHWGAALDVFRTMQSSSGVTTPRE---VVMEGGGVGVAEVEASVGVSSEFLSTDVWCKTITAVAQ 394
            +SSEALAVEALAR  +RTAVA           VARASPVEKQSGGGK  EAIEQLEKERGGGLTPSLGAFERAIQALGA               XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ADDATYRKA+KACAMANDPTQVVGVWELFVGKGR+VTDVAAAEVSRVARAMGALGDW+GIIGLLGTRSTAGGGPLPDLDRL          YNWLVSAHAQLGDAKAVLT+I +MGRNGHPADADTYSLAFKAFVKSGGRHWG ALDVFRTMQSSSGVTTPR     VME  GVGVAEVEAS GVSSEFLSTDVWCKTIT VAQ
Sbjct:   27 QSSEALAVEALARAPKRTAVAAAAGSTGAA--VARASPVEKQSGGGKWTEAIEQLEKERGGGLTPSLGAFERAIQALGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDATYRKAMKACAMANDPTQVVGVWELFVGKGRVVTDVAAAEVSRVARAMGALGDWQGIIGLLGTRSTAGGGPLPDLDRLRAMVHPAFAIYNWLVSAHAQLGDAKAVLTTIGNMGRNGHPADADTYSLAFKAFVKSGGRHWGGALDVFRTMQSSSGVTTPRGGDGSVMEVEGVGVAEVEASAGVSSEFLSTDVWCKTITTVAQ 397
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9573.21185.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAL8_9PHAE2.310e-12383.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 137..168
e-value: 1.2E-4
score: 20.0
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 130..161
e-value: 7.1E-6
score: 25.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 281..315
score: 8.144
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 204..238
score: 6.215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 169..203
score: 5.875
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 99..133
score: 7.805
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 134..168
score: 11.915
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 316..348
score: 7.728
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 275..360
e-value: 3.3E-8
score: 35.2
coord: 75..264
e-value: 1.1E-25
score: 92.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 69..235
coord: 281..346

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9573contigEcto-sp13_S_contig9573:13..5414 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9573.21185.1mRNA_Ecto-sp13_S_contig9573.21185.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9573 13..5414 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9573.21185.1 ID=prot_Ecto-sp13_S_contig9573.21185.1|Name=mRNA_Ecto-sp13_S_contig9573.21185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=394bp
MLFEGNDADLPVGHTNACTAALCNRNFGTATNAKSSEALAVEALARTAER
TAVAAAAAAGSAGAAVARASPVEKQSGGGKRKEAIEQLEKERGGGLTPSL
GAFERAIQALGAARKWAEAVGLMSEVEEAGMVPDEDTYSGVIRDCCKSGR
IEEASRMLTAMICKGYKPPQEVVNTVLDTCTTRKNTRKVTKVLLAMRAQG
LDADDATYRKAIKACAMANDPTQVVGVWELFVGKGRIVTDVAAAEVSRVA
RAMGALGDWKGIIGLLGTRSTAGGGPLPDLDRLSYNWLVSAHAQLGDAKA
VLTSIEDMGRNGHPADADTYSLAFKAFVKSGGRHWGAALDVFRTMQSSSG
VTTPREVVMEGGGVGVAEVEASVGVSSEFLSTDVWCKTITAVAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf