prot_Ecto-sp13_S_contig95505.21162.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig95505.21162.1
Unique Name	prot_Ecto-sp13_S_contig95505.21162.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	51

Homology

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BLAST of mRNA_Ecto-sp13_S_contig95505.21162.1 vs. uniprot
Match: D8LGY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY3_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query:    1 RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGK 51
            RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGK
Sbjct:  182 RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGK 232

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BLAST of mRNA_Ecto-sp13_S_contig95505.21162.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.910e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0

Query:    1 RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGK 51
            RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGK
Sbjct:  186 RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQGK 236

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BLAST of mRNA_Ecto-sp13_S_contig95505.21162.1 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.660e-6
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query:    1 RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQG 50
            RLLIP +AGGLVIGR G+NI  L  +SGA+V+L QK      ER+VT+ G
Sbjct:  147 RLLIPASAGGLVIGRGGSNIKGLSESSGARVSLSQKQTSPSSERVVTIGG 196

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig95505.21162.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig95505.21162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LGY3_ECTSI	1.200e-21	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KLG6_9PHAE	6.910e-21	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A836CIW2_9STRA	5.660e-6	58.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10		coord: 1..51 e-value: 1.7E-10 score: 42.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 2..50
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 1..50 e-value: 8.0E-7 score: 28.8
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..51
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..13
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 1..51 score: 12.663

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig95505	contig	Ecto-sp13_S_contig95505:226..378 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig95505.21162.1	mRNA_Ecto-sp13_S_contig95505.21162.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig95505 226..378 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig95505.21162.1 ID=prot_Ecto-sp13_S_contig95505.21162.1|Name=mRNA_Ecto-sp13_S_contig95505.21162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
RLLIPLTAGGLVIGRRGANIAALLAASGAKVTLGQKADVKVHERLVTVQG
K

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1