prot_Ecto-sp13_S_contig9546.21155.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9546.21155.1
Unique Nameprot_Ecto-sp13_S_contig9546.21155.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length121
Homology
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: A0A6H5KN60_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.150e-83
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0
Query:    1 MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFE+GKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSL LADRCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct:  211 MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: D8LR37_ECTSI (Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 1.200e-81
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0
Query:    1 MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            +VHGVLWADEGEVDLPLCRNRGCPPLHMVNFE+GKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGT DSL LA RCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct:  137 IVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: A0A369WRJ6_9GAMM (Pseudouridine synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM)

HSP 1 Score: 137 bits (344), Expect = 2.580e-38
Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 0
Query:    1 MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            +V G L   +G V+LPL  +    P  MV+ + GKP+LT++R+L++A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T  +L  ADR  LHA  L +RHP +GER  FTAPC F
Sbjct:   87 VVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: A0A5P9CUX3_9HYPH (Pseudouridine synthase n=1 Tax=Labrenzia sp. THAF82 TaxID=2587861 RepID=A0A5P9CUX3_9HYPH)

HSP 1 Score: 132 bits (332), Expect = 2.660e-36
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 0
Query:    1 MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            +V G +  D GEVDLPL  +    P  MV+FE+GKP+ T+W+VLER A  TR+ L P++GRSHQLR+HM ++GHPI+GD FY + ++L  +DR  LHA +L L HP  GER  F A C F
Sbjct:  104 VVWGHVLEDTGEVDLPLICDWPNRPKQMVSFEHGKPAQTRWQVLERDAQTTRLRLFPLTGRSHQLRVHMLSLGHPIIGDRFYASDEALNASDRLALHAESLTLHHPANGERVTFRAECPF 223          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: A0A2E0QBQ2_9PROT (Pseudouridine synthase n=1 Tax=Micavibrio sp. TaxID=2024841 RepID=A0A2E0QBQ2_9PROT)

HSP 1 Score: 132 bits (331), Expect = 3.290e-36
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    2 VHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            V G++  DEGE++LPL  +    PL  V+   GKP+LTKWRV++R AD T + L P +GR+HQLR+HM AIGHPILGD FY  +D   ++DR LLHA TL L HPKT ER  F++ C F
Sbjct:   99 VSGLITDDEGEINLPLMVDWPNRPLQKVDHGEGKPALTKWRVIKRNADTTLLYLFPETGRTHQLRVHMQAIGHPILGDRFYAPEDIQTMSDRLLLHAETLELTHPKTDERMKFSSVCPF 217          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: UPI00177CCD4D (RluA family pseudouridine synthase n=1 Tax=Rhizobium sp. CFBP 8762 TaxID=2775279 RepID=UPI00177CCD4D)

HSP 1 Score: 132 bits (331), Expect = 3.660e-36
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 0
Query:    1 MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            +V G L  D G++DLPL  +    P H V+ + G+P+ T+WRVL R  DRTRV+L P++GR+HQLR+HM AIGHPILGD FY  + +L  ADR LLHA TL  RHP  G    FT PC F
Sbjct:  104 VVSGQLVGDSGQIDLPLAIDTNNKPRHRVDHDNGRPAQTEWRVLAREEDRTRVKLSPLTGRTHQLRVHMKAIGHPILGDAFYADEAALAAADRLLLHAETLRFRHPD-GRDVTFTVPCPF 222          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: A0A1J5MZV6_9GAMM (Pseudouridine synthase n=1 Tax=Gammaproteobacteria bacterium MedPE TaxID=1860093 RepID=A0A1J5MZV6_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 9.070e-36
Identity = 63/113 (55.75%), Postives = 76/113 (67.26%), Query Frame = 0
Query:    8 ADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            +D G VDLPL  +    PL MV+   GKPSLT W++L +  + T VEL P++GRSHQLR+HM  IGHPILGD FYG  D+ PLA R  LHAHTL + HP T +   FT PC F
Sbjct:  105 SDTGSVDLPLICDWPNRPLQMVDHNVGKPSLTHWKLLSKTDNTTMVELTPITGRSHQLRVHMQQIGHPILGDRFYGKPDAHPLAPRLCLHAHTLSIMHPITKKPLSFTTPCPF 217          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: A0A8J3CSH6_9PROT (RNA pseudouridine synthase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CSH6_9PROT)

HSP 1 Score: 130 bits (326), Expect = 1.280e-35
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 0
Query:    1 MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            +V GV+  D G +DLPL  +    PL MV  E G+ S T WRVLER  DRTR+EL P++GRSHQLR+H+ AIGH ILGD FY + D L  +DR LLHAHTL L  P  GER   T+P  F
Sbjct:   85 VVDGVVTEDTGHIDLPLRADWPNRPLQMVCHEQGRASQTDWRVLERLDDRTRLELTPLTGRSHQLRVHLKAIGHTILGDEFYASGDVLAASDRLLLHAHTLSLFKPTGGERITVTSPLPF 204          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: UPI001C984345 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Marinobacter nauticus TaxID=2743 RepID=UPI001C984345)

HSP 1 Score: 129 bits (325), Expect = 2.710e-35
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 0
Query:    2 VHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            V G L   EGEVDLPL  +    P  MV FE GKPSLT++RV+      + VEL P++GRSHQLR+HM A+GHPILGD FY  +++L  +DR LLHAHTLC++ P +GE   FTAP  F
Sbjct:  100 VWGHLAQPEGEVDLPLICDWPNRPKQMVCFENGKPSLTQYRVMSEDERSSLVELTPITGRSHQLRVHMLALGHPILGDSFYAHEEALAASDRLLLHAHTLCIKQPYSGEPLSFTAPVPF 218          
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Match: A0A3B0RSM4_9ZZZZ (Ribosomal large subunit pseudouridine(746) synthase @ tRNA pseudouridine(32) synthase (Fragment) n=2 Tax=root TaxID=1 RepID=A0A3B0RSM4_9ZZZZ)

HSP 1 Score: 128 bits (321), Expect = 4.170e-35
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 0
Query:    2 VHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 120
            ++G++  D GE+DLPL  +    PLHMV+ E GK +LT+W VL+R+ D TRV   PV+GR+HQLR+H  +IGHPILGD  Y    +L +ADR LLHA  L L HP + ER  FTA  +F
Sbjct:   66 LYGIVEQDTGEIDLPLILDWPNRPLHMVDHENGKAALTRWEVLDRSKDTTRVAFHPVTGRTHQLRVHATSIGHPILGDSLYAHDKALKMADRLLLHARLLTLTHPYSKERMTFTAEADF 184          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9546.21155.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN60_9PHAE1.150e-8398.33PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D8LR37_ECTSI1.200e-8195.00Pseudouridylate synthases, 23S RNA-specific n=1 Ta... [more]
A0A369WRJ6_9GAMM2.580e-3855.83Pseudouridine synthase n=1 Tax=Motiliproteus coral... [more]
A0A5P9CUX3_9HYPH2.660e-3652.50Pseudouridine synthase n=1 Tax=Labrenzia sp. THAF8... [more]
A0A2E0QBQ2_9PROT3.290e-3654.62Pseudouridine synthase n=1 Tax=Micavibrio sp. TaxI... [more]
UPI00177CCD4D3.660e-3654.17RluA family pseudouridine synthase n=1 Tax=Rhizobi... [more]
A0A1J5MZV6_9GAMM9.070e-3655.75Pseudouridine synthase n=1 Tax=Gammaproteobacteria... [more]
A0A8J3CSH6_9PROT1.280e-3555.83RNA pseudouridine synthase n=1 Tax=Algimonas arcti... [more]
UPI001C9843452.710e-3555.46bifunctional tRNA pseudouridine(32) synthase/23S r... [more]
A0A3B0RSM4_9ZZZZ4.170e-3552.10Ribosomal large subunit pseudouridine(746) synthas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 1..120
e-value: 4.4E-32
score: 113.3
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..120
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 2..120
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 25..71
e-value: 5.9E-7
score: 29.7
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 2..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9546contigEcto-sp13_S_contig9546:4224..5291 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9546.21155.1mRNA_Ecto-sp13_S_contig9546.21155.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9546 4224..5291 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9546.21155.1 ID=prot_Ecto-sp13_S_contig9546.21155.1|Name=mRNA_Ecto-sp13_S_contig9546.21155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEYGKPSLTKWRVLERAADR
TRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLPLADRCLLHAHT
LCLRHPKTGERTMFTAPCEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf