prot_Ecto-sp13_S_contig9528.21136.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9528.21136.1
Unique Nameprot_Ecto-sp13_S_contig9528.21136.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length137
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9528.21136.1 vs. uniprot
Match: A0A6H5JLW9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW9_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 7.410e-77
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 0 
Query:    1 DFGDAPDVEIETLSPLGLVLGKKALARRVSAREHDLACLRSTARWGVVLFVIGAVLSLFFKAGDPLFILSTVALSRFLAEPVFFVHATGKSGRAASARRPFVSPSLRNALLGSPYGPAALPAARGSPNDG 130
            DFGDAPDVE+ETLSPLGL LGKKA ARRVSAREHDLACLRSTA WGV LFVIGAVLSL FKAGDPLFILSTVALSRFLAEPVFFVHA+GKSGRAASARRPFVSPSLRNALLGSPYGPAALPAARGSPN G
Sbjct:  132 DFGDAPDVEMETLSPLGLALGKKASARRVSAREHDLACLRSTAGWGVALFVIGAVLSLLFKAGDPLFILSTVALSRFLAEPVFFVHASGKSGRAASARRPFVSPSLRNALLGSPYGPAALPAARGSPNGG 261
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BLAST of mRNA_Ecto-sp13_S_contig9528.21136.1 vs. uniprot
Match: D7G1C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C8_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 4.380e-75
Identity = 124/136 (91.18%), Postives = 130/136 (95.59%), Query Frame = 0 
Query:    1 DFGDAPDVEIETLSPLGLVLGKKALARRVSAREHDLACLRSTARWGVVLFVIGAVLSLFFKAGDPLFILSTVALSRFLAEPVFFVHATGKSGRAASARRPFVSPSLRNALLGSPYGPAALPAARGSPNDGEENEKD 136
            DFGDAPDVE+ETLSPLGLVLGKKA  +RVSAREHDLACLRSTARWGV LFVIGAVLSLFFKAGDPLFILSTVALSRFLAEPVFFVHATGKSGRAASARRPFVSPSLRNALLGSP+GPA LPAA  +P+DGEENE+D
Sbjct:  474 DFGDAPDVEMETLSPLGLVLGKKASTQRVSAREHDLACLRSTARWGVALFVIGAVLSLFFKAGDPLFILSTVALSRFLAEPVFFVHATGKSGRAASARRPFVSPSLRNALLGSPHGPAVLPAAGRAPDDGEENEED 609
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9528.21136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLW9_9PHAE7.410e-7793.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G1C8_ECTSI4.380e-7591.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012098SRP-independent targeting protein 3PFAMPF10032Pho88coord: 28..106
e-value: 9.6E-7
score: 28.2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 61..65
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9528contigEcto-sp13_S_contig9528:2304..4285 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9528.21136.1mRNA_Ecto-sp13_S_contig9528.21136.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9528 2304..4574 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9528.21136.1 ID=prot_Ecto-sp13_S_contig9528.21136.1|Name=mRNA_Ecto-sp13_S_contig9528.21136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
DFGDAPDVEIETLSPLGLVLGKKALARRVSAREHDLACLRSTARWGVVLF
VIGAVLSLFFKAGDPLFILSTVALSRFLAEPVFFVHATGKSGRAASARRP
FVSPSLRNALLGSPYGPAALPAARGSPNDGEENEKD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012098SND3_fun