prot_Ecto-sp13_S_contig9514.21125.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9514.21125.1
Unique Nameprot_Ecto-sp13_S_contig9514.21125.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length142
Homology
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 9.560e-67
Identity = 119/131 (90.84%), Postives = 121/131 (92.37%), Query Frame = 0
Query:   12 RGSKKKSEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNTEHGFKFEEYGESITIRRTIKQPSGGGFALVGADGEV 142
            RGSKKKSEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIR       + GDA+LEVTLLNTEHGF FEEYGESITIRRTIKQPSGGGFALVGADG V
Sbjct:  168 RGSKKKSEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRHG-----WKGDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGGFALVGADGAV 293          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 2.170e-58
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 0
Query:   19 EAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNTEHGFKFEEYGESITIRRTIKQPSGGGFALVGADGEV 142
            EAGVVLK++VSNFMCHRKL+VPLCK VNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKM DFIR       + GDA+LEVTLLNTEHGF FEEYGESITIRRTIKQPSGGGFAL+G D +V
Sbjct:   82 EAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHG-----WKGDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGGFALLGHDRKV 200          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.680e-38
Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 0
Query:   18 SEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNTEHGFKFEEYGESITIRRTIKQPSGGGFALVGADGEV 142
            SE+GV+L+I+V NFMCHR LTV LC+ +NFING NGSGKSAILAALQICLGA+A +THRA K+ D IR       +GGDA +EV +LNT  G KF+ YG+SIT+RR IK+ +     L+  DG V
Sbjct:   72 SESGVILRIDVKNFMCHRHLTVDLCRNINFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIRHG-----WGGDAEVEVKMLNTPDGHKFDVYGQSITVRRVIKRGASAVVELLSHDGTV 191          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: A0A6V2GEJ9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GEJ9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.340e-30
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 0
Query:   19 EAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNT-EHGFKFEEYGESITIRRTIKQPSG-GGFALV 136
            EAGV+ KI V NFMCHRKLTV LC+ VNFING NGSGKSAILAA+QICLGA A  THRA+ + + +R  + S+  G  A + VTLLN  + GF+ + YG++IT+ R+I    G  G+ L+
Sbjct:  101 EAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGAGAKRTHRARNLKELVRKEAGSNCAG--AKVRVTLLNRGDDGFQRDVYGDTITVERSISLRGGYNGYKLL 218          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: A0A7S2KU12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU12_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.020e-29
Identity = 66/127 (51.97%), Postives = 89/127 (70.08%), Query Frame = 0
Query:   18 SEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNT-EHGFKFEEYGESITIRRTIKQPSGG--GFALVGADGE 141
            +EAG++ ++ V NFMCHRKL+V LC+ VNFI+G+NGSGKSAILAA+Q+CLGA A  THRA+ + D +R  + +   G  A L VTLLN    GF  E YG++IT+ R I   SGG  G+ L+  +G+
Sbjct:  111 AEAGIIQEVYVENFMCHRKLSVKLCRNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEAGADCSG--AKLRVTLLNKGSDGFMPEVYGDTITVERCISMRSGGFNGYKLLDQNGK 235          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: B8BRT7_THAPS (Smc-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRT7_THAPS)

HSP 1 Score: 122 bits (306), Expect = 1.510e-29
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 0
Query:   18 SEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNT-EHGFKFEEYGESITIRRTIKQPSGG--GFALVGADGE 141
            +EAG++ ++ V NFMCHRKL+V LC+ VNFI+G+NGSGKSAILAA+Q+CLGA A  THRA+ + D +R  + +   G  A L VTLLN    G++ E YG+ IT+ R+I   SGG  G+ L+ A+G+
Sbjct:   97 AEAGIINEVYVENFMCHRKLSVKLCRNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEAGADCTG--AKLRVTLLNKGADGYQPEVYGDYITVERSISLRSGGYNGYKLLDAEGK 221          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: A0A7S2UR98_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR98_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.820e-29
Identity = 67/126 (53.17%), Postives = 88/126 (69.84%), Query Frame = 0
Query:   18 SEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNT-EHGFKFEEYGESITIRRTIKQPSG-GGFALVGADGE 141
            +EAG++ ++ V +FMCHRKLTV LC+ VNFI+G NGSGKSAILAA+QICLGA A  THRA+ + + +R    +S     A + VTLLN  E G+K E YG+SITI R+I    G  G+ L+  DG+
Sbjct:   59 AEAGIIKRVYVQDFMCHRKLTVDLCQNVNFIHGANGSGKSAILAAIQICLGAHARRTHRARNLKELVRKEGSNSG----AKVRVTLLNGGEDGYKREMYGDSITIERSITLRGGYNGYRLLDHDGK 180          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: A0A7S4RG96_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RG96_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.720e-29
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 0
Query:   19 EAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNT-EHGFKFEEYGESITIRRTIKQPSG-GGFALV 136
            EAGV+ KI V NFMCHRKLTV LC+ VNFING NGSGKSAILAA+QICLGA A  THRA+ + + +R  + S+  G  A + VTLLN  + GF+ + YG++IT+ R+I    G  G+ L+
Sbjct:  101 EAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGAGAKRTHRARNLKELVRKEAGSNCAG--AKVRVTLLNRGDDGFQRDVYGDTITVERSISLRGGYNGYKLL 218          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.870e-29
Identity = 56/120 (46.67%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   18 SEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNT-EHGFKFEEYGESITIRRTIKQPSGGGFALV 136
            +E G++ ++ V NFMCH+K+T+ LC+ VNFI+G+NGSGKSA+LAA+QICLGA A  THRA+ + D IR       +GG ++++V LLN  +  ++ + YG+ +T+ RTI++   GG+ L+
Sbjct:   97 AECGIIHRVYVENFMCHKKMTIDLCRNVNFIHGQNGSGKSAVLAAVQICLGAGARRTHRARNLKDLIRKG-----WGGKSVVKVRLLNRGDDAYEHDLYGDYVTVERTIERNGSGGYRLL 211          
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Match: A0A7S4NJE4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJE4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.770e-29
Identity = 64/126 (50.79%), Postives = 89/126 (70.63%), Query Frame = 0
Query:   18 SEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILEVTLLNT-EHGFKFEEYGESITIRRTIKQPSG-GGFALVGADGE 141
            +EAGV+ ++ V NFMCHRKLTV LC+ VNFI+G+NGSGKSA+LAA+QICLGA A  THRA+ + + +R  +  +  G  A + VTLLN  E G++ E YG+ IT+ R+I    G  G+ L+  +G+
Sbjct:  199 AEAGVITRVYVENFMCHRKLTVDLCRNVNFIHGQNGSGKSAVLAAVQICLGAGAKRTHRARNLKELVRKEAGENCSG--AKVRVTLLNCGEDGYRREIYGDKITVERSISLRGGYNGYKLLDEEGK 322          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9514.21125.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M2_ECTSI9.560e-6790.84Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D7G4M1_ECTSI2.170e-5883.87Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A836CML4_9STRA2.680e-3860.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6V2GEJ9_9STRA3.340e-3055.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2KU12_9STRA1.020e-2951.97Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B8BRT7_THAPS1.510e-2951.97Smc-like protein n=1 Tax=Thalassiosira pseudonana ... [more]
A0A7S2UR98_9STRA3.820e-2953.17Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4RG96_9STRA4.720e-2955.83Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]
A0A7S1FSU6_9STRA6.870e-2946.67Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S4NJE4_9STRA9.770e-2950.79Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 24..128
e-value: 2.4E-14
score: 53.3
NoneNo IPR availableGENE3D3.40.50.300coord: 23..139
e-value: 3.2E-22
score: 81.6
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 5..140
IPR027132Structural maintenance of chromosomes protein 6PANTHERPTHR19306:SF6STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6coord: 5..140
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 24..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9514contigEcto-sp13_S_contig9514:497..1473 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9514.21125.1mRNA_Ecto-sp13_S_contig9514.21125.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9514 497..1473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9514.21125.1 ID=prot_Ecto-sp13_S_contig9514.21125.1|Name=mRNA_Ecto-sp13_S_contig9514.21125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
KKEKKEKDEKSRGSKKKSEAGVVLKINVSNFMCHRKLTVPLCKQVNFING
RNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRSASVSSSYGGDAILE
VTLLNTEHGFKFEEYGESITIRRTIKQPSGGGFALVGADGEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027132SMC6
IPR027417P-loop_NTPase