prot_Ecto-sp13_S_contig9513.21124.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9513.21124.1
Unique Nameprot_Ecto-sp13_S_contig9513.21124.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length179
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9513.21124.1 vs. uniprot
Match: A0A6H5KXT6_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT6_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.870e-46
Identity = 84/94 (89.36%), Postives = 85/94 (90.43%), Query Frame = 0 
Query:   65 MAPTPRRQWNGSAAAARLVLGLVLLLAVMVPTGASLFKRKRTNVKEVQPSGGNPFGKGGKGSKRGKVKEDVAWLLEDTSDGGWKPVRDDGHVQV 158
            MAP PRR+WNGSAAAARLVLGLVLLL VM PTGASLFKRKRTN KEV PSGG PFGKGGK   RGKVKEDVAWLLEDTSDGGWKPVRDDGHVQV
Sbjct:    1 MAPIPRRRWNGSAAAARLVLGLVLLLTVMGPTGASLFKRKRTNSKEVHPSGGVPFGKGGKXXXRGKVKEDVAWLLEDTSDGGWKPVRDDGHVQV 94
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BLAST of mRNA_Ecto-sp13_S_contig9513.21124.1 vs. uniprot
Match: D7G7Z6_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.440e-28
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0 
Query:   93 MVPTGASLFKRKRTNVKEVQPSGGNPFGKGGKGSKRGKVKEDVAWLLEDTSDGGWKPVRDDGHVQV 158
            M PTGASLFKRKRTN KEVQPSGG PFGKGG   KRGKVKEDVAWLLEDTSDGGWKPVRDDGHVQV
Sbjct:    1 MGPTGASLFKRKRTNSKEVQPSGGVPFGKGG---KRGKVKEDVAWLLEDTSDGGWKPVRDDGHVQV 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9513.21124.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXT6_9PHAE3.870e-4689.36START domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G7Z6_ECTSI1.440e-2890.91START domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..77
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..101
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 102..179
NoneNo IPR availableTMHMMTMhelixcoord: 79..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9513contigEcto-sp13_S_contig9513:5502..6293 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9513.21124.1mRNA_Ecto-sp13_S_contig9513.21124.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9513 5502..6295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9513.21124.1 ID=prot_Ecto-sp13_S_contig9513.21124.1|Name=mRNA_Ecto-sp13_S_contig9513.21124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
QGIGDLFWSVFSQLRDSTKTFSFTSSIRGGQLWLLCKRGLSAHPAWCILS
TQPDASSCWGQLRPMAPTPRRQWNGSAAAARLVLGLVLLLAVMVPTGASL
FKRKRTNVKEVQPSGGNPFGKGGKGSKRGKVKEDVAWLLEDTSDGGWKPV
RDDGHVQVCLLSNLVHTRVARGELPRPSL
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