prot_Ecto-sp13_S_contig946.21071.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig946.21071.1
Unique Nameprot_Ecto-sp13_S_contig946.21071.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length90
Homology
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 6.380e-44
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKV 76
            GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGAL+KLLRAKCFSCHNLRLSKSKTRVAAVK+
Sbjct:   49 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALFKLLRAKCFSCHNLRLSKSKTRVAAVKM 124          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 8.640e-44
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKV 76
            GLYDPVLGPVDKMMMC TCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVK+
Sbjct:   49 GLYDPVLGPVDKMMMCETCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKM 124          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: A0A662WAX4_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WAX4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 6.540e-29
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKVTTL 79
            GLYDP LGPVD  M+C TC Q QK CPGH+GHIEL V VY+P+LFG L  LL+ KCF+CH  RL+ +++RV  VK+  L
Sbjct:   51 GLYDPSLGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGHLLTLLKRKCFTCHKFRLASARSRVVRVKILLL 129          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.030e-26
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKV 76
            GLYDP LGP  +  +C TCGQD  +CPGH+GHIELA  VYHP+LF  L+KLL+ KCFSCH LR++    R+ AVK+
Sbjct:   49 GLYDPALGPSQQRAVCPTCGQDHLSCPGHVGHIELAAEVYHPLLFPILFKLLKTKCFSCHKLRMNSQTCRIYAVKM 124          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: A0A024G1Q2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1Q2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.710e-26
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKV 76
            GLYDP LGP+D  M+C TC Q QK CPGHMGHIEL V VY+P+LF  L  +L+ KCF+CH LRL  SK+RV  VK+
Sbjct:   51 GLYDPALGPIDYNMICPTCHQTQKECPGHMGHIELPVPVYNPVLFPKLLTILKRKCFNCHKLRLDCSKSRVYRVKI 126          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: H3H1S7_PHYRM (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3H1S7_PHYRM)

HSP 1 Score: 109 bits (272), Expect = 7.710e-26
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKVTTL 79
            GLYDP +GPVD  M+C TC Q QK CPGH+GHIEL V VY P+LFG ++ LL+ KCF+CH  R++ +++RV  VK+  L
Sbjct:   51 GLYDPAMGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYSPVLFGQMFNLLKRKCFTCHKFRVASARSRVVRVKILLL 129          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: A0A7S1GA41_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GA41_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.930e-26
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKV 76
            G+YDP LGP D    CATC     +CPGHMGH+EL V VYHP+L   L++LLRAKCF CH LRL  + +RV  VK+
Sbjct:   78 GVYDPALGPTDLASQCATCHLSYADCPGHMGHVELCVPVYHPLLVNVLFRLLRAKCFQCHRLRLVAAASRVYYVKL 153          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: A0A4P9XAF7_9FUNG (DNA-directed RNA polymerase subunit (Fragment) n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XAF7_9FUNG)

HSP 1 Score: 108 bits (269), Expect = 1.960e-25
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKVT 77
            GLYDP LGP+D+  +CATC QD +NCPGH GHIELAV VY+PI F  LYKLL++ CF CH LRLS+++      K+T
Sbjct:   48 GLYDPALGPLDRKAVCATCHQDSQNCPGHFGHIELAVPVYNPISFPLLYKLLQSLCFYCHRLRLSRAQVLYFCTKLT 124          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: K3X8S6_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8S6_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 2.670e-25
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKV 76
            GLYDP +GPVD  M+C TC Q QK CPGH+GHIEL V VY+P+LFG +  LL+ KCF+CH  R++ +++RV  VK+
Sbjct:   51 GLYDPAMGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFGHMLNLLKRKCFTCHKFRIASARSRVLRVKI 126          
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Match: A0A421EWZ9_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EWZ9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.830e-25
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    1 GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKVTTL 79
            GLYDP LGPVD  M+C TC Q QK CPGH+GHIEL V VY+P+LF  L  LL+ KCF+CH  R++ + +RV  VK+  L
Sbjct:  530 GLYDPALGPVDFNMICPTCHQTQKECPGHLGHIELPVPVYNPVLFNVLLTLLKRKCFTCHKFRVASASSRVIRVKILLL 608          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig946.21071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ16_9PHAE6.380e-4497.37DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FNY1_ECTSI8.640e-4497.37DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A662WAX4_9STRA6.540e-2960.76DNA-directed RNA polymerase (Fragment) n=2 Tax=Not... [more]
A0A836C8M0_9STRA3.030e-2660.53DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024G1Q2_9STRA7.710e-2663.16DNA-directed RNA polymerase subunit n=1 Tax=Albugo... [more]
H3H1S7_PHYRM7.710e-2656.96DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A7S1GA41_9STRA7.930e-2657.89DNA-directed RNA polymerase (Fragment) n=1 Tax=Bic... [more]
A0A4P9XAF7_9FUNG1.960e-2561.04DNA-directed RNA polymerase subunit (Fragment) n=2... [more]
K3X8S6_GLOUD2.670e-2557.89DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A421EWZ9_9STRA6.830e-2558.23DNA-directed RNA polymerase subunit n=3 Tax=Phytop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1280coord: 1..83
e-value: 1.0E-16
score: 63.0
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..80
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..77
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 1..75
e-value: 4.8E-17
score: 62.3
IPR015699DNA-directed RNA pol I, largest subunitPANTHERPTHR19376:SF11DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1coord: 1..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig946contigEcto-sp13_S_contig946:3984..4700 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig946.21071.1mRNA_Ecto-sp13_S_contig946.21071.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig946 3984..4700 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig946.21071.1 ID=prot_Ecto-sp13_S_contig946.21071.1|Name=mRNA_Ecto-sp13_S_contig946.21071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
GLYDPVLGPVDKMMMCATCGQDQKNCPGHMGHIELAVSVYHPILFGALYK
LLRAKCFSCHNLRLSKSKTRVAAVKVTTLALAAVETVYC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007080RNA_pol_Rpb1_1
IPR015699DNA-dir_RNA_pol1_lsu