prot_Ecto-sp13_S_contig9447.21056.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9447.21056.1
Unique Nameprot_Ecto-sp13_S_contig9447.21056.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length325
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9447.21056.1 vs. uniprot
Match: D8LKQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ2_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 5.630e-61
Identity = 189/256 (73.83%), Postives = 193/256 (75.39%), Query Frame = 0 
Query:   71 NLEVLEVCLRALPAHERLRLPHALTAQLETQGDGNSAPGSTAALPAREGGAAGCARAAAA-GVGGVPEPLPGSTRGGDEHAGLGGPGPAAAARATSPPLAAVGNDEGAVLDTLLGLQAATGPAA-GAGAGGGVEXXXXXXXXXXXGRTATANSDGERSGAAGGGEEVDVLQSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSLGGAAALGEGVVGPGAGMDIGRDGGGTDELEDWLDGMLADA 324
            NLEVLEVCLR LPAHERLRLPHALTAQLETQGDGN APG TAALPAREG AA CARAAAA G GGVPEP+PG TRGGD++AGLGGPGP A+A ATS PLA VGNDEGAVLDTLLGLQ ATGPAA GAGAGG       XXXXXXX                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            GVVGPGAGMD GR GGGTDELEDWLDGMLADA
Sbjct:  185 NLEVLEVCLRTLPAHERLRLPHALTAQLETQGDGNPAPGPTAALPAREGAAAECARAAAAAGEGGVPEPVPGGTRGGDKNAGLGGPGPIASAGATSAPLAVVGNDEGAVLDTLLGLQEATGPAAAGAGAGGSWRANSGXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVGPGAGMDSGRGGGGTDELEDWLDGMLADA 430
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9447.21056.1 vs. uniprot
Match: A0A6H5L5W0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W0_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 5.230e-60
Identity = 113/128 (88.28%), Postives = 116/128 (90.62%), Query Frame = 0 
Query:   71 NLEVLEVCLRALPAHERLRLPHALTAQLETQGDGNSAPGSTAALPAREGGAAGCARAAAAGVGGVPEPLPGSTRGGDEHAGLGGPGPAAAARATSPPLAAVGNDEGAVLDTLLGLQAATGPAAGAGAG 198
            NLEVLEVCLR LPAHERLRLPHA TAQLETQG+GN APG TAA PA EG AA CARAAA+GVGGVPEP+PGST GG EH GLGGPGPAAAA ATSPPLAAVGNDEGAVLDTLLGLQAATGPAAGAGAG
Sbjct:  134 NLEVLEVCLRTLPAHERLRLPHAFTAQLETQGEGNPAPGPTAAFPAGEGEAAECARAAASGVGGVPEPVPGSTPGGGEHVGLGGPGPAAAAGATSPPLAAVGNDEGAVLDTLLGLQAATGPAAGAGAG 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9447.21056.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKQ2_ECTSI5.630e-6173.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5W0_9PHAE5.230e-6088.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9447contigEcto-sp13_S_contig9447:384..2645 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9447.21056.1mRNA_Ecto-sp13_S_contig9447.21056.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9447 98..3261 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9447.21056.1 ID=prot_Ecto-sp13_S_contig9447.21056.1|Name=mRNA_Ecto-sp13_S_contig9447.21056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MGCHPQSLEMECVVTSWCILPWTASLDGHALRVECEREATFREIFTAGVG
ERGAPMPFLPSTGHFQPSLPNLEVLEVCLRALPAHERLRLPHALTAQLET
QGDGNSAPGSTAALPAREGGAAGCARAAAAGVGGVPEPLPGSTRGGDEHA
GLGGPGPAAAARATSPPLAAVGNDEGAVLDTLLGLQAATGPAAGAGAGGG
VEAGAGGSWRAGGGRTATANSDGERSGAAGGGEEVDVLQSCDDDRAAGRE
EEVVPAEPPSSSSSSSSSLWAQAGGGSSGRRDSLGGAAALGEGVVGPGAG
MDIGRDGGGTDELEDWLDGMLADA*
back to top