prot_Ecto-sp13_S_contig9437.21042.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9437.21042.1
Unique Nameprot_Ecto-sp13_S_contig9437.21042.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length67
Homology
BLAST of mRNA_Ecto-sp13_S_contig9437.21042.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.240e-26
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0
Query:    1 ERSSLPLVAGLAAMMSLIFILGDLVNNRMIRPVSTGVFLLSASYCVAMLRRQWAA--GGTREGRNNNFT 67
            E SSLPL++G+AAMMS+IFILGDLVN RM+ PVSTGVFLLS SYCVAMLRRQWA+  GGTREG NN+FT
Sbjct:   98 EGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFT 166          
BLAST of mRNA_Ecto-sp13_S_contig9437.21042.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.050e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0
Query:    1 ERSSLPLVAGLAAMMSLIFILGDLVNNRMIRPVSTGVFLLSASYCVAMLRRQWAA--GGTREGRNNNFT 67
            E SSLP +AGLA ++S IFILGDL+N RM+ P S  VFLLS SYCVAMLRRQWA+  GGTREGRNN+FT
Sbjct:   80 EGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFT 148          
BLAST of mRNA_Ecto-sp13_S_contig9437.21042.1 vs. uniprot
Match: A0A6H5JDD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.190e-17
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0
Query:    1 ERSSLPLVAGLAAMMSLIFILGDLVNNRMIRPVSTGVFLLSASYCVAMLRRQWAAGGTREG 61
            E SSLP +AGLAA++S IFI+GDL+N RM+ P S  VFLLS SYCVAMLRRQWA+ G   G
Sbjct:   80 EGSSLPFLAGLAAIISTIFIVGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGESGG 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9437.21042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRQ0_ECTSI4.240e-2679.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ1_ECTSI1.050e-2172.46RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JDD0_9PHAE4.190e-1767.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..67
NoneNo IPR availableTMHMMTMhelixcoord: 5..22
NoneNo IPR availableTMHMMTMhelixcoord: 32..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9437contigEcto-sp13_S_contig9437:1031..2453 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9437.21042.1mRNA_Ecto-sp13_S_contig9437.21042.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9437 1029..2453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9437.21042.1 ID=prot_Ecto-sp13_S_contig9437.21042.1|Name=mRNA_Ecto-sp13_S_contig9437.21042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
ERSSLPLVAGLAAMMSLIFILGDLVNNRMIRPVSTGVFLLSASYCVAMLR
RQWAAGGTREGRNNNFT
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