prot_Ecto-sp13_S_contig9436.21040.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9436.21040.1
Unique Nameprot_Ecto-sp13_S_contig9436.21040.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length86
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9436.21040.1 vs. uniprot
Match: D7G5L1_ECTSI (Imm upregulated 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.190e-22
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 0 
Query:    1 MWGKVWILPLCTVIVAIISAPSASGVGCSCGDGGPTSTDKFDITQNQIDPLLCGPDD--VVQCDTGEVCVCDYTVDTEITNLQAVITG 86
            MWG+VW+LPLCTVIV I+SAPSASG  CSCG  GPTS    D     ID L CG D    +QCD G VCVC+ + +  +TNL  VI G
Sbjct:    1 MWGRVWVLPLCTVIVVILSAPSASGAPCSCG--GPTSDAPLDTA---IDVLECGSDGDGPLQCDDGVVCVCNLSPEVAVTNLFEVING 83
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BLAST of mRNA_Ecto-sp13_S_contig9436.21040.1 vs. uniprot
Match: D8LF32_ECTSI (Imm upregulated 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF32_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.640e-17
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 0 
Query:    1 MWGKVWILPLCTVIVAIISAPSASGVGCSCGDGGPTSTDKFDIT-QNQIDPLLCGPDDVVQCDTGEVCVCDYTVDTEI 77
            M+GKVW LPLCT++VAI SA SA G G SC  GGPTS      T  N IDPL CG D    CD+   CVCD+ ++  +
Sbjct:    1 MFGKVWALPLCTLMVAIFSASSAFGQG-SCSCGGPTSGSVSTATISNLIDPLECGDDGTASCDSDYACVCDFGIEINV 77
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BLAST of mRNA_Ecto-sp13_S_contig9436.21040.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.600e-10
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 0 
Query:    1 MWGKVWILPLCTVIVAIISAPSASGVGCSCGDGGPTSTDKFDITQNQIDPLLCGPDDVVQCDTGEVCVCDYTVDTEITNLQAVITG 86
            MW KVWILPLCT++VA  SA  A G  CSCG  GPT  D   +    ID L CG  D      G +CVC+Y +  ++ +L A + G
Sbjct:    1 MWAKVWILPLCTMMVATFSASFAFGQTCSCG--GPT-VDSPSVAD--IDVLQCGAADGTTDCGGNICVCNYDISIDV-DLVAFLAG 80
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BLAST of mRNA_Ecto-sp13_S_contig9436.21040.1 vs. uniprot
Match: A0A6H5JZQ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.000e-7
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 0 
Query:    1 MWGKVWILPLCTVIVAIISAPSASGVGCSCGDGGPTSTDKFDITQNQIDPLLCGPDDVVQ---CDTGE-VCVCDYTVDTEI 77
            M GK+W LPL TV+VAI SAP  SG  C+CG  GPT +     + + ID + CG     Q    D GE  C+CDYTV  E+
Sbjct:   47 MRGKLWTLPLHTVMVAIFSAPFVSGE-CACG--GPTESQP---STDMIDVVSCGATTEGQKSCTDIGEKACLCDYTVSIEV 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9436.21040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5L1_ECTSI1.190e-2256.82Imm upregulated 9 n=1 Tax=Ectocarpus siliculosus T... [more]
D8LF32_ECTSI3.640e-1752.56Imm upregulated 7 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5K7V7_9PHAE1.600e-1045.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ2_9PHAE1.000e-746.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..86
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.784
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9436contigEcto-sp13_S_contig9436:1372..1629 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9436.21040.1mRNA_Ecto-sp13_S_contig9436.21040.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9436 1349..1629 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9436.21040.1 ID=prot_Ecto-sp13_S_contig9436.21040.1|Name=mRNA_Ecto-sp13_S_contig9436.21040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MWGKVWILPLCTVIVAIISAPSASGVGCSCGDGGPTSTDKFDITQNQIDP
LLCGPDDVVQCDTGEVCVCDYTVDTEITNLQAVITG
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