prot_Ecto-sp13_S_contig9401.20998.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9401.20998.1
Unique Nameprot_Ecto-sp13_S_contig9401.20998.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length738
Homology
BLAST of mRNA_Ecto-sp13_S_contig9401.20998.1 vs. uniprot
Match: D8LG58_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG58_ECTSI)

HSP 1 Score: 1139 bits (2946), Expect = 0.000e+0
Identity = 648/737 (87.92%), Postives = 672/737 (91.18%), Query Frame = 0
Query:    1 MTLDGAAGGIDERSGRLHLDMAQEDLDEELRTQPLLDSVRSLVNKERQLAGLQLKEKEREAELWRDRFRQLQASSFFFHIESGGIDSGAPEAGETIATESWHRDEEDSDWDNLQAASKKAGDPYLGKLRRQDSLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRDNSIDDACVQPLKSLMALRQLCRLDLRGNQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAGACRHLWSLSVTLDDFDGNFFMNGPRKTKAKTAGGGRTPTGTGRSTRKAAGPPPXXXXXXXXXXMNALALARAFHPRAPNGGAGALLNGDGESEANSRGVRGDTRRGSVRVGRGSITSLGLPYARLHPRTVEELAAHAVSSLTSLDLSFCFIGPAGAVALARALDGDGGSSSTGNGTRGRGSRSLRSLKLPHNTVGDTGAHALGRSLSNNRFLTFXXXXXXXXXXXXXXXXAAAVGSRGNDGSGSVLRRLDVGDNPLEGEAARLLVAAAACDAPTNGHGGKDDDGTTRGTTTLRVLGLDRALGAAVATREAAXXXXXXXXXXXXXXTTTLVTIGNEVSVQPEDAIGNDGLVQVYQVLLDSRFETPADGSFTIRGGARGRGATLDIQWNFATAWLDPCWWRVSQTREGHPEFSVKEGIGTEEGWVSGQANNDGAEMRDGYRCQRLGARSTQESSARRLNGPRPISMQRVEKTRRSQGFRPTSDRQRRWAHEVL 737
            M LDGAAGGIDE SGRLHLDMAQEDL+EELRTQPLLDSVRSLVNKERQLAGLQL+EKEREAELWRDRFRQLQ       IESGGIDS A EAGETIATESWHRDEEDSDWDNLQAASKKAGD YLGKLRRQ+SLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLR N+IDDACVQPLKSLMALRQLC       QLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGL+AAIKAG CRHLWSLSVTLDDFDGNFFMN PRKTKAKTAGGG T TGTGRSTRKAAGPPPXXXXXXXXXX NALALARAFHPRAP+GGAGALLN DGESEANSRGVRG+T+RGS RVGRGSITSLGLPYARLHPRTVEELAAHA+SSLT LDLSFC+IGPAGAVALAR LDG  G SS G+GT GRGSRSLRSL+LPHN VGDTGAHALG+SLS+NR    XXXXXXXXXXXXXXXXAAAVGSRGNDG GSVL RLD+GDNPLEGEAARLLVAAA   APT+GHGGKD DGTTRG TTL+VLGLDRALGAAVATREAAXXXXXXXXXXXXXX  TLV IGNEVSVQPEDAIGN GLVQVYQVLLDSRFE PAD  FTIRGGA+GRGATLDI+W+ AT WLDPCWWRVSQTR+G PE SVKEG+GTEEGWVSGQAN+DG E+RDGYRCQRLGA STQESS RRLN PRPISMQRVEKTR SQGFRP SD QRRWA EVL
Sbjct:   10 MILDGAAGGIDEGSGRLHLDMAQEDLEEELRTQPLLDSVRSLVNKERQLAGLQLEEKEREAELWRDRFRQLQ-------IESGGIDSAAREAGETIATESWHRDEEDSDWDNLQAASKKAGDRYLGKLRRQESLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRGNNIDDACVQPLKSLMALRQLCXXXXXXXQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLKAAIKAGGCRHLWSLSVTLDDFDGNFFMNAPRKTKAKTAGGGPTATGTGRSTRKAAGPPPXXXXXXXXXXXNALALARAFHPRAPDGGAGALLNEDGESEANSRGVRGNTKRGSARVGRGSITSLGLPYARLHPRTVEELAAHAISSLTHLDLSFCYIGPAGAVALARGLDGHDGGSSRGSGTHGRGSRSLRSLQLPHNAVGDTGAHALGQSLSSNRCXXXXXXXXXXXXXXXXXXXAAAVGSRGNDGGGSVLTRLDMGDNPLEGEAARLLVAAATRQAPTDGHGGKDGDGTTRGATTLQVLGLDRALGAAVATREAAXXXXXXXXXXXXXXXXTLVAIGNEVSVQPEDAIGNGGLVQVYQVLLDSRFEMPADEIFTIRGGAKGRGATLDIEWSCATDWLDPCWWRVSQTRKGQPELSVKEGVGTEEGWVSGQANHDGGELRDGYRCQRLGAPSTQESSTRRLNRPRPISMQRVEKTRHSQGFRPASDWQRRWAREVL 739          
BLAST of mRNA_Ecto-sp13_S_contig9401.20998.1 vs. uniprot
Match: A0A6H5K012_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K012_9PHAE)

HSP 1 Score: 1040 bits (2688), Expect = 0.000e+0
Identity = 615/766 (80.29%), Postives = 630/766 (82.25%), Query Frame = 0
Query:    1 MTLDGAAGGIDERSGRLHLDMAQEDLDEELRTQPLLDSVRS--------------------------------------------------------------LVNKERQLAGLQLKEKEREAELWRDRFRQLQASSFFFHIESGGIDSGAPEAGETIATESWHRDEEDSDWDNLQAASKKAGDPYLGKLRRQDSLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRDNSIDDACVQPLKSLMALRQLCRLDLRGNQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAGACRHLWSLSVTLDDFDGNFFMNGPRKTKAKTAGGGRTPTGTGRSTRKAAGPPPXXXXXXXXXXMNALALARAFHPRAPNGGAGALLNGDGESEANSRGVRGDTRRGSVRVGRGSITSLGLPYARLHPRTVEELAAHAVSSLTSLDLSFCFIGPAGAVALARALDGDGGSSSTGNGTRGRGSRSLRSLKLPHNTVGDTGAHALGRSLSNNRFLTFXXXXXXXXXXXXXXXXAAAVGSRGNDGSGSVLRRLDVGDNPLEGEAARLLVAAAACDAPTNGHGGKDDDGTTRGTTTLRVLGLDRALGAAVATREAAXXXXXXXXXXXXXXTTTLVTIGNEVSVQPEDAIGNDGLVQV--------YQVLLDSRFETPADGSFTIRGGARGRGATLDIQWNFATAWLDPCWWRVSQTREGHPEFSVKEGIGTEEGWVSGQANNDGAEMRDGYRCQRLGARSTQE 696
            M LDGAAGGIDE SGRLHLDMAQEDLDEELRTQPLLDSVRS                                                              LVNKERQLAGLQL+EKEREAELWRDRFRQLQAS FF H+                    W  DE D   DNLQAASKKAGDPYLGKLRRQDSLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRDNSIDD CVQPLKSLMALRQLC LDLRGNQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAG CR LWSLSVTLDDFDG FFMN PRKTKA+TAGGG   TGTGRS RKAAGPPP XXXXXXXXX NALALARAFHPRAP+GGAGA LNGDGESEANSRGVRG+TRRGS RVGRGSITSLGLPYARLHP+TVEELAAHAVSSLTSLDLSFC+IGPAGAV LARALDGD GSS  G+GTRG+GSRSLRSLKLPHN VGDTGAHALGRSLSNNR    XXXXXXXXXXXXXXXXAAAVGSRGNDG GSVL RLD+GDNPLEGEAARLLVAAA CDAPT GHGG D DGTTRGTTTL+VLGLDRALG AVATREA XXXXXXXXXXXXX TTTLVTIGNEVSVQPEDAIGNDGLVQV        YQVLLDSRFETPAD  FTIRGGARGRGATL+IQW+FAT WLDPCWWRVSQTREG PEFSVKEG+G+EEGWVSGQANNDGAEMRDGYRCQRLGARSTQE
Sbjct:   10 MILDGAAGGIDEGSGRLHLDMAQEDLDEELRTQPLLDSVRSNDIASSSFLQRDQNPKLKRGANGTTSSTTTDDHLVGRSVFCTIVYACADNSSIRLPLLFLEGLVNKERQLAGLQLEEKEREAELWRDRFRQLQASPFFVHV--------------------W--DEWDVQ-DNLQAASKKAGDPYLGKLRRQDSLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRDNSIDDTCVQPLKSLMALRQLCSLDLRGNQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAGGCRRLWSLSVTLDDFDGKFFMNAPRKTKAETAGGGPKATGTGRSLRKAAGPPPAXXXXXXXXXXNALALARAFHPRAPDGGAGAFLNGDGESEANSRGVRGNTRRGSARVGRGSITSLGLPYARLHPKTVEELAAHAVSSLTSLDLSFCYIGPAGAVTLARALDGDDGSSRRGSGTRGQGSRSLRSLKLPHNAVGDTGAHALGRSLSNNRCXXXXXXXXXXXXXXXXXXXAAAVGSRGNDGGGSVLTRLDMGDNPLEGEAARLLVAAATCDAPTKGHGGTDGDGTTRGTTTLQVLGLDRALGTAVATREAXXXXXXXXXXXXXXTTTTLVTIGNEVSVQPEDAIGNDGLVQVGTRVNTMVYQVLLDSRFETPADEIFTIRGGARGRGATLEIQWSFATDWLDPCWWRVSQTREGRPEFSVKEGVGSEEGWVSGQANNDGAEMRDGYRCQRLGARSTQE 752          
BLAST of mRNA_Ecto-sp13_S_contig9401.20998.1 vs. uniprot
Match: A0A7S2WJM3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJM3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.550e-10
Identity = 96/333 (28.83%), Postives = 134/333 (40.24%), Query Frame = 0
Query:  128 LRRQDSLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRDNSIDDACVQPLKSLMALRQLCRLDLRGNQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAGACRHLWSLSVTLDDFDGNFFMNGPRKTKAKTAGGGRTPTGTGRSTRKAAGPPPXXXXXXXXXXMNALALARAFHPRAPNGGAGALLNGDGESEANSRGVRGDTRRGSVRVGRGSITSLGLPYARLHPRTVEELAA----HAVSSLTSLDLSFCFIGPAGAVALARALDGDGGSSSTGNGTRGRGSRSLRSLKLPHNTVGDTGAHALGRSLSNNR 456
            L+  + LDLS   +  +DLE  + +L  L     + L    + D   + L+ L+      ++DL  N LG     A+L +L R   +  L LE N   A TP  G RL   L  A +     +L SL VTLDD+      N P    A  A GG        + R+   P            +NA+   R                            R DT          ++++LGL  ARL   T+++L++        SLT+LDLSF FIG AGA ALA AL   G                L  L+LPHN +G  G  A+  +L  +R
Sbjct:  134 LKGLEHLDLSDEPLKAKDLEAAIKRLPRLHRSPRLSLARAGLTDDLARTLQKLLEY-SFIKVDLSSNNLGAIGLAAVLTALPRRASVTELNLEDNQPLASTPLVGERLGNFLMDAYR--YAPNLCSLRVTLDDY------NSPGAAAAAKAKGG--------AKRRGKSP------------LNAVQFVRMLR-------------------------RADTL---------TLSNLGLVGARLSLETIKQLSSLLGERPGQSLTNLDLSFAFIGFAGATALASALRRPG--------------CPLAGLQLPHNGLGSGGTEAICEALLKSR 389          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9401.20998.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG58_ECTSI0.000e+087.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K012_9PHAE0.000e+080.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WJM3_9STRA3.550e-1028.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..74
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 211..241
e-value: 47.0
score: 5.3
coord: 384..411
e-value: 0.5
score: 19.3
coord: 455..482
e-value: 0.0043
score: 26.3
coord: 489..516
e-value: 38.0
score: 6.0
coord: 183..210
e-value: 1.0
score: 17.0
coord: 427..454
e-value: 0.018
score: 24.2
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 312..565
coord: 134..238
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 128..512
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 107..267
e-value: 7.8E-16
score: 59.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 354..518
e-value: 3.4E-26
score: 93.5
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 385..406
e-value: 0.0028
score: 17.6
coord: 454..477
e-value: 9.3E-4
score: 19.1
coord: 427..448
e-value: 0.38
score: 10.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9401contigEcto-sp13_S_contig9401:679..4706 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9401.20998.1mRNA_Ecto-sp13_S_contig9401.20998.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9401 679..4730 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9401.20998.1 ID=prot_Ecto-sp13_S_contig9401.20998.1|Name=mRNA_Ecto-sp13_S_contig9401.20998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=738bp
MTLDGAAGGIDERSGRLHLDMAQEDLDEELRTQPLLDSVRSLVNKERQLA
GLQLKEKEREAELWRDRFRQLQASSFFFHIESGGIDSGAPEAGETIATES
WHRDEEDSDWDNLQAASKKAGDPYLGKLRRQDSLDLSRRGIGKEDLEGIV
VKLRWLRGFTSVDLRDNSIDDACVQPLKSLMALRQLCRLDLRGNQLGPSS
GNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAGACRH
LWSLSVTLDDFDGNFFMNGPRKTKAKTAGGGRTPTGTGRSTRKAAGPPPA
AGPMPPAHPMNALALARAFHPRAPNGGAGALLNGDGESEANSRGVRGDTR
RGSVRVGRGSITSLGLPYARLHPRTVEELAAHAVSSLTSLDLSFCFIGPA
GAVALARALDGDGGSSSTGNGTRGRGSRSLRSLKLPHNTVGDTGAHALGR
SLSNNRFLTFLSLASNGIGPAGARALAAAVGSRGNDGSGSVLRRLDVGDN
PLEGEAARLLVAAAACDAPTNGHGGKDDDGTTRGTTTLRVLGLDRALGAA
VATREAARRAASTAAAYEAATTTTLVTIGNEVSVQPEDAIGNDGLVQVYQ
VLLDSRFETPADGSFTIRGGARGRGATLDIQWNFATAWLDPCWWRVSQTR
EGHPEFSVKEGIGTEEGWVSGQANNDGAEMRDGYRCQRLGARSTQESSAR
RLNGPRPISMQRVEKTRRSQGFRPTSDRQRRWAHEVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt