prot_Ecto-sp13_S_contig9240.20821.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9240.20821.1
Unique Nameprot_Ecto-sp13_S_contig9240.20821.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length250
Homology
BLAST of mRNA_Ecto-sp13_S_contig9240.20821.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 1.510e-156
Identity = 223/247 (90.28%), Postives = 231/247 (93.52%), Query Frame = 0
Query:    1 MIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQANAGIKPNNGTYRALLQLCKDNGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGD----VEWPKWPLKVGRTGGAILELHDLTQSIALETVQVALLDAIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLKPEFQQRNEGCVELKPASLEAYIRRMKRRGAA 243
            MIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQA+AGIKPNNGTYRALLQLCKD GSWEAAILLLEHSRRSK KLNLFSFDLLITTVA+QGYKEVSTMLYELGVVDADRALLETEGN        VEWPKWPLKVGRTGGAILELHDLTQ IALETVQVALLD IRRPLRRPYWSGDKRWRI+TGMGNNSKDREA+IKPAVVELLEDLGL+PEFQQRNEGCVELKPA+LEAYIRR   + +A
Sbjct:   52 MIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKAKLNLFSFDLLITTVAKQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIKPAVVELLEDLGLRPEFQQRNEGCVELKPANLEAYIRRQVTKASA 298          
BLAST of mRNA_Ecto-sp13_S_contig9240.20821.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.670e-30
Identity = 76/203 (37.44%), Postives = 112/203 (55.17%), Query Frame = 0
Query:   34 VAGMQANAGIKPNNGTYRALLQLCKDNGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGDVEWPKWPLKVGRTGGAILELHDLTQSIALETVQVALLDAIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLKPEFQQRNEGCVELKPASLEAYIRR 236
            +A M     I+P   TYRA++ L      W+ ++LL+EH +R+      F +D + + + + G+ E++TM++E  + D    L     N     E               L+LH+ T S AL  V+V LLD  R+P  R +    +   I+TGMGNNSKD EAVIKP V+ELL D+GL+P   + NEGC+ L+PA L+AY+ R
Sbjct:  246 LAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEEL-----NSFAPPE---------------LDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLQAYMAR 428          
BLAST of mRNA_Ecto-sp13_S_contig9240.20821.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.320e-15
Identity = 66/221 (29.86%), Postives = 111/221 (50.23%), Query Frame = 0
Query:   43 IKPNNGTYRALLQLCKDNGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGDVE-WPKWPLKVGRTGGAILELHDLTQSIALETVQVALLDAIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLE-DLGLKPEF----------------QQRNEGCVELKPASLEAYIR-RMKRRGAAT 244
            ++P+  TYRA++ +C  +  W  ++LLLEH R    +   F ++ + T +  +G  +++ ++YE       R+L      G+G  E W +   KV        +LH  T + A   V+ AL D +R+P  RP+        I+TG+G  S++  AVIKPA++++L  +L +  E                 Q+ N GCVE++P  L+A+ R R+   GA T
Sbjct:  139 LEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYE-------RSL------GEGVFEPWIEDDNKV--------DLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAWARARLAAVGATT 338          
BLAST of mRNA_Ecto-sp13_S_contig9240.20821.1 vs. uniprot
Match: A0A812I2Z0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812I2Z0_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 2.790e-7
Identity = 62/216 (28.70%), Postives = 104/216 (48.15%), Query Frame = 0
Query:   47 NGTYRALLQLCKDNGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLE--------TEGNGDGDVE-----WPKWPLKVGRTGG--------------AILELHDLTQSIALETVQVALLDAIR-RPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLKPEFQQRNEGCVELKPASLEAYI 234
            +GT+ AL ++ + N SW++ + +LE +  +  +L+  +  ++++  A Q   +   +L  LG+++A   +L+        T     GD+      + + PL+  R GG                L+LH L    A   V  ALLDA   +P   P W       +VTG GN+S+  E+V++PAV++LL++LGL       NEG V L    L  +I
Sbjct:  322 DGTFNALCRVFEHNSSWQSCLQILEEASLAGPQLSQLTLSVVVS--ACQKSTKWHQVLQLLGMMEASGMVLDDVFQAAGMTSHVYMGDLATALAWYRERPLRGLRLGGRKAGAGWFEHGRRWGHLDLHGLQPEEARLAVCCALLDATMVKPGMLPSWG----LVLVTGRGNHSEG-ESVVRPAVLQLLKELGLAARVDPYNEGRVVLPARELLTFI 530          
BLAST of mRNA_Ecto-sp13_S_contig9240.20821.1 vs. uniprot
Match: A0A812VXG1_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812VXG1_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 2.390e-5
Identity = 60/222 (27.03%), Postives = 103/222 (46.40%), Query Frame = 0
Query:   47 NGTYRALLQLCKDNGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLE--------TEGNGDGDVE-----WPKWPLKVGRTGG--------------AILELHDLTQSIALETVQVALLDAIR-RPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLKPEFQQRNEGCVELKPASLEAYIRRMKRR 240
            +GT+  L ++ ++N SW++ + +LE +  + T L+  +  ++++  A Q            G+++A   +L+        T     GD+      + + PL+  R GG                L+LH L    A   V  ALLDA   +P   P W       +VTG G++S+  E+V++PAV++LL +LGL       NEG V L    L  +I  +++R
Sbjct:  341 DGTFNTLCRVFENNSSWQSCLQILEDASLAGTPLSQLTLSVVVS--ACQKSTXXXXXXXXXGMMEASGTVLDDVFQAAGMTSHVHMGDLATALAWYRERPLRGLRLGGRKAGAGWLEPGRRWGYLDLHGLQPEEARLAVCCALLDATMVKPGMLPSWG----LVLVTGRGSHSEG-ESVLRPAVLQLLLELGLAARVDPYNEGRVILPARELLNFICTVEKR 555          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9240.20821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4J1_ECTSI1.510e-15690.28Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G4I1_ECTSI1.670e-3037.44Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
A0A835YUL6_9STRA1.320e-1529.86Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A812I2Z0_9DINO2.790e-728.70Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812VXG1_9DINO2.390e-527.03Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 13..119
e-value: 7.6E-8
score: 34.1
NoneNo IPR availableGENE3D3.30.1370.110coord: 136..226
e-value: 1.3E-10
score: 43.1
IPR002625Smr domainPROSITEPS50828SMRcoord: 144..228
score: 14.276
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 143..223

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9240contigEcto-sp13_S_contig9240:1167..5841 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9240.20821.1mRNA_Ecto-sp13_S_contig9240.20821.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9240 2..5841 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9240.20821.1 ID=prot_Ecto-sp13_S_contig9240.20821.1|Name=mRNA_Ecto-sp13_S_contig9240.20821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
MIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQANAGIKPNNGTY
RALLQLCKDNGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEV
STMLYELGVVDADRALLETEGNGDGDVEWPKWPLKVGRTGGAILELHDLT
QSIALETVQVALLDAIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKP
AVVELLEDLGLKPEFQQRNEGCVELKPASLEAYIRRMKRRGAATAATPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002625Smr_dom
IPR036063Smr_dom_sf