prot_Ecto-sp13_S_contig924.20820.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig924.20820.1
Unique Nameprot_Ecto-sp13_S_contig924.20820.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length340
Homology
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 501 bits (1290), Expect = 8.430e-177
Identity = 257/277 (92.78%), Postives = 263/277 (94.95%), Query Frame = 0
Query:    1 MLSLQHTTLAPNMTMGRTRHAALCLVLAALTTMTVIPGVGAFSGGLRVAISQQPHDCSMVASSSTVSPRPLNPEAASVPPSGRRRSSSSSYPTALSMAPPMDFGGAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMDLEVLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSA 277
            MLS Q+TTLAPNMTMGRTRHA LCLVLAALTTM VIPGVGAFSGGLRVAI+QQPHDCSMVASSSTVSPRPLNP AA+V PSG         PTALSMAPPMDFGGAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPM+L+VLGRGRIIECSVCGNRWFQTAERALTLT+NFLMKDWTEDRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSA
Sbjct:   18 MLSHQYTTLAPNMTMGRTRHAGLCLVLAALTTMAVIPGVGAFSGGLRVAITQQPHDCSMVASSSTVSPRPLNPAAAAVTPSGXXXXXXXXSPTALSMAPPMDFGGAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSA 294          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A7S3TR26_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 115 bits (288), Expect = 3.530e-27
Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = 0
Query:  113 PREMDPSLQGSAGDTYVKCGKCQACYPMDLEVLGRGRIIEC--SVCGNRWFQTAERALTLTDNFLMKDWTE---DRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASN 275
            PR     +Q  A   +V C +C+A + +D      GR + C  + C + WFQTA+R  TL +   + ++ +   DR+AA  ++A+    FN+FVGN+ +SV+E DL  +F   G V    ++TD++G  RG+G V M  E  G +A+K L+G E+QGRS+ V  G  N
Sbjct:   21 PRHESALMQTKAPSKFVTCARCKATFEVDEADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEMKDRIAA-GKSAEPVGRFNIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQN 187          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 113 bits (282), Expect = 1.930e-25
Identity = 59/173 (34.10%), Postives = 100/173 (57.80%), Query Frame = 0
Query:  115 EMDPSLQGSAGDTYVKCGKCQACYPMDLEVLG-RGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAEAAKNF----------AGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNS 276
            + DP++Q      +V+CG+C A Y +  +++   G  ++C VCG+ WFQ + R   L+  +++KD+ ED     AE  +N              ++FVGN+PFS++E D+  +F   G V S  +V D+   S+G+G V+M  +E+G +AI AL+G E+ GR + V++G S +
Sbjct:   99 KSDPNVQ-----YFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKA 266          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A7R9WVI4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVI4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.760e-24
Identity = 62/177 (35.03%), Postives = 96/177 (54.24%), Query Frame = 0
Query:  108 PAEKDPREMDPSLQGSAG------DTYVKCGKCQACYPMDLEVLG--RGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTE---DRVAATAEAAKN--FAG-FNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVK 270
            PA       D + Q   G       TY +CG+C   + +  + LG  RGR +ECSVCG+ W+Q+ +R   +   F + D  E    R+A   E  ++  F G   L+VGNI F+ +E+D+   F   G+V   +LV D+ G +RG+G + M T+E G KAI+ L+G  + GR++ V+
Sbjct:   45 PAPAPAANTDATTQSKYGVSIDMPSTYARCGRCDTSFALAPDDLGNGRGRRLECSVCGHTWYQSKDRLSNMNGGFEIIDLPETDLQRIANNIEEGRSPKFVGEMKLYVGNIAFTCTEQDMQEAFSEAGDVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIELLDGASVNGRNIAVR 221          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A7S1Z4Z8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z8_TRICV)

HSP 1 Score: 106 bits (265), Expect = 1.580e-23
Identity = 60/153 (39.22%), Postives = 92/153 (60.13%), Query Frame = 0
Query:  127 TYVKCGKCQACYPM---DLEVLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTED---RVAATAEAAK--NFAGF-NLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVK 270
            TYV+CG+C A Y +   DL   G+GR +ECSVCG+ W+Q+ +R   L+  F  + + +    RV +  EA +  +F G    +VGN+ +   E+ +   F   G V   +L+TDE+G SRG+  V M TEEDG KA++ L+G E+ GR++ V+
Sbjct:   79 TYVQCGRCHAAYAIQEDDLGDRGKGRRVECSVCGHSWYQSRDRLFGLSTGFEYRPFPQSDVVRVKSNLEAGRPADFRGVAKFYVGNLDYGTDEESVRVHFETAGTVGDVSLITDEDGRSRGFAFVTMMTEEDGEKAVQ-LDGTELAGRNISVR 230          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A8J5X7H2_DIALT (RRM domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X7H2_DIALT)

HSP 1 Score: 104 bits (259), Expect = 2.080e-22
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 0
Query:  128 YVKCGKCQACYPMDLEVL-GRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVA---ATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLV 269
            +  C +C A Y +D+ +  G+G  + C+VC N WFQ  ER +   D F +  + E+R     A  ++ +     N++VGN+PF++S+ DL  +F  FG V    LV DE G S+G+G V+M +EE+G+KAI  LN     GR + V
Sbjct:   73 FAVCSRCGAIYDVDMALFRGKGAKVRCTVCSNTWFQLTERLVEKPDAFDIVSFPEERRVERPAVLDSPRGGGIINIYVGNMPFALSDVDLANLFAPFGTVTKIMLVRDEIGRSKGFGFVEMASEEEGQKAILELNDRAFGGRPITV 218          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A6V2PYU0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYU0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.140e-22
Identity = 53/154 (34.42%), Postives = 90/154 (58.44%), Query Frame = 0
Query:  126 DTYVKCGKCQACYPMDLEVLG---RGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAA-----TAEAAKNFAGFN-LFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVK 270
            +TY +CG+C   + +  E LG   +GR +ECSVCG+ W+Q  ++   + + F + +  +  V+       A+    F G + L+VGN+ F V+E+DL   F    EV    ++TD++G S+G+  V M T+E G KA++ L+G E+ GR++ V+
Sbjct:   64 ETYARCGRCSTSFALTSEDLGDRGKGRRVECSVCGHSWYQARDKLFDIREGFELVELPQSDVSRIERNIAADRDPRFTGDSKLYVGNLDFKVTEEDLFEEFSKVDEVGDVTIITDDSGRSKGFAFVTMLTKEGGEKALEKLDGEEVFGRNLNVR 217          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: L1IF02_GUITC (RRM domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IF02_GUITC)

HSP 1 Score: 101 bits (252), Expect = 8.150e-22
Identity = 59/156 (37.82%), Postives = 86/156 (55.13%), Query Frame = 0
Query:  128 YVKCGKCQACYPMDLEVLGR-GRIIECSVCGNRWFQTAER-----ALTLTDNFLMKDWTEDRVAATAEAAKNF-----AGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTD-ENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKV 271
            Y  CGKC A Y ++   LG  G+ ++CSVC N+WFQ+A R     A +    F + +W +   A +    K F       F LFVGN+PF +SE +L A+F   GEV S +L+ D E+G  RG+G V    E+  + A+  LNG+ + GR + V +
Sbjct:   55 YTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSI 210          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A2V3J103_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 102 bits (255), Expect = 1.030e-21
Identity = 52/167 (31.14%), Postives = 89/167 (53.29%), Query Frame = 0
Query:  128 YVKCGKCQACYPMDLEVLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAEAAKNFAG------------------FNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNS 276
            Y KC KC A Y +D  VLG GR + CSVC N WFQ  +R   + +     ++  DR A   E  +                      F++F+GN+P+SV+E++L  +  +  + K  ++VTD++G+S+G+    + +EE+  + +++L+   I GR++ V+ G  NS
Sbjct:  111 YTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQNRARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKNS 277          
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Match: A0A6U4MCT9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MCT9_HEMAN)

HSP 1 Score: 100 bits (250), Expect = 4.010e-21
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  122 GSAG--DTYVKCGKCQACYPMDLEVLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAEAAKNFA-------GFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDE-NGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKV 271
            GS G  + Y  CG C+A Y +DLE LG GR ++C+VC + WFQ+A R  T+  +  ++ +  +      +A  N            LFVGN+PFS++E  L  +F  +GEV S +++ D   G  +GYG V    ++ G  A+  ++G+ + GR + VK+
Sbjct:   92 GSTGVEEKYATCGTCKASYILDLEELGAGRKVKCAVCDHTWFQSAARLQTVRSSDKVQPFPVEEFKERQKALGNVVTRHDRKGAVTLFVGNMPFSITEDKLKGVFEEYGEVASISIICDPATGRPKGYGFVDYVEKDCGEVAMNQIDGMLVDGRELAVKI 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig924.20820.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE8.430e-17792.78RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3TR26_EMIHU3.530e-2736.90Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
I2CR05_NANGC1.930e-2534.10RRM domain-containing protein (Fragment) n=3 Tax=M... [more]
A0A7R9WVI4_9STRA4.760e-2435.03Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1Z4Z8_TRICV1.580e-2339.22Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A8J5X7H2_DIALT2.080e-2237.67RRM domain-containing protein n=1 Tax=Diacronema l... [more]
A0A6V2PYU0_9STRA6.140e-2234.42Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
L1IF02_GUITC8.150e-2237.82RRM domain-containing protein n=1 Tax=Guillardia t... [more]
A0A2V3J103_9FLOR1.030e-2131.14Putative RNA-binding protein RbpE n=1 Tax=Gracilar... [more]
A0A6U4MCT9_HEMAN4.010e-2134.38Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 198..270
e-value: 3.3E-22
score: 89.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 199..266
e-value: 3.3E-18
score: 65.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 197..274
score: 17.967
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 177..292
e-value: 4.6E-24
score: 86.9
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 185..303
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..339
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..41
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 195..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig924contigEcto-sp13_S_contig924:13969..19333 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig924.20820.1mRNA_Ecto-sp13_S_contig924.20820.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig924 13966..19333 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig924.20820.1 ID=prot_Ecto-sp13_S_contig924.20820.1|Name=mRNA_Ecto-sp13_S_contig924.20820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MLSLQHTTLAPNMTMGRTRHAALCLVLAALTTMTVIPGVGAFSGGLRVAI
SQQPHDCSMVASSSTVSPRPLNPEAASVPPSGRRRSSSSSYPTALSMAPP
MDFGGAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMDLEVLGRGRI
IECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAEAAKNFAGFNLF
VGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDG
RKAIKALNGIEIQGRSMLVKVGASNSAGGGGGGGGGGGGGRMGGGGRNGG
GRMGGGGRGGGYQGRGGGGDYGGYQGRAGGGGGYSGRGY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf